Locus 1095

Sequence ID 2R_DroMel_CAF1
Location 4,405,972 – 4,406,066
Length 94
Max. P 0.965162
window1940

overview

Window 0

Location 4,405,972 – 4,406,066
Length 94
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 79.22
Mean single sequence MFE -29.18
Consensus MFE -18.24
Energy contribution -18.27
Covariance contribution 0.03
Combinations/Pair 1.19
Mean z-score -2.69
Structure conservation index 0.62
SVM decision value 1.58
SVM RNA-class probability 0.965162
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4405972 94 + 20766785
UUUGUGCAUCAA--GUCG--UUCACAU-AACCGGCUUUUCCUCCCGCAGGUUCCAAAAACUCAUCUGGUCCCCAGUGGGACCACACCCCAGUGGCCUGA
..........((--((((--.......-...)))))).........(((((..............(((((((....)))))))(((....)))))))). ( -23.90)
>DroSec_CAF1 15940 96 + 1
UUUGUGAAUCAAGAGUCG--UUCACAA-AACCGGCUUUUCAACCCGCAGGUUCCAAAAACUCAUCUGGAGCCCAGUGGGACCACACCCCAGUGGCCUGA
(((((((((........)--)))))))-)...(((.......(((((.(((((((..........)))))))..)))))..(((......))))))... ( -32.70)
>DroSim_CAF1 15810 96 + 1
UUUGUGGAUCAAGAGUCG--UUCACAA-AACCGUCUUUUCAACCCGCAGGUUCCAAAAACUCAUCUGGAGCCCAGUGGGACCACACCCCAGUGGCCUGA
(((((((((........)--)))))))-).............(((((.(((((((..........)))))))..))))).((((......))))..... ( -30.00)
>DroEre_CAF1 16048 96 + 1
UUUCAGCAUCAAGAGGCC--UUUAUAA-AACUGGCCUUUCCUUCCGCAGGUUCCAAAAACUUAUCUGGAGCCCUGUGGGACCACACCCAAGUGGCCUGA
..((((.....(((((((--.......-....)))))))..((((((((((((((..........))))).)))))))))((((......)))).)))) ( -34.60)
>DroYak_CAF1 15980 96 + 1
UUUCAGUACCAAGAGUCC--UUUACAA-AACAGGCCUUUCCUCCCGCAGGUUCCAAAAACUUAUCUGGAGCCCCGUGGGACCACACCCAAGUGGACUAA
....(((....((((.((--(......-...))).))))..((((((.(((((((..........)))))))..))))))((((......))))))).. ( -27.80)
>DroPer_CAF1 15763 95 + 1
UUCAUGCAUGGG--AUCGGAUUCAAUUUAAUC--CCUUUUCGUUUGCAGGUUCCAGAAACUUAUAUGGAGCCCCAUAGGUCCUCACCCAAGCGGCCUCA
.....((..(((--((..(((...)))..)))--))....((((((..(((((((..........))))))).....(((....))))))))))).... ( -26.10)
>consensus
UUUGUGCAUCAAGAGUCG__UUCACAA_AACCGGCCUUUCCUCCCGCAGGUUCCAAAAACUCAUCUGGAGCCCAGUGGGACCACACCCAAGUGGCCUGA
..........................................(((((.(((((((..........)))))))..))))).((((......))))..... (-18.24 = -18.27 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:26 2006