| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,378,822 – 4,378,929 |
| Length | 107 |
| Max. P | 0.500000 |
| Location | 4,378,822 – 4,378,929 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 82.59 |
| Mean single sequence MFE | -30.98 |
| Consensus MFE | -23.08 |
| Energy contribution | -23.97 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4378822 107 - 20766785 UCUUGCUGGCCAAGUGGAAGCGAUCAAG-UACUCACCAUAUCACUGUUGUGGUGACGCAGCAAAAUGGCAUUGCCAUAGAGCAAUGUCCUGUGUCCCGAUCCGGUGCC ..(((((..((....)).))))).....-............(((((...(((.(((((((......((((((((......))))))))))))))))))...))))).. ( -35.10) >DroSec_CAF1 1152 95 - 1 UCUUGCCGGU------------AUUCAG-UACUCACCAUAUCACUGUUGUGGUGGCGCAGCAAAAUGGCAUUGCCAUAGAGCAAUGUCCUGUGUCCCGAUCCGGUGCC ....(((((.------------..((..-....(((((((.......)))))))((((((......((((((((......))))))))))))))...)).)))))... ( -33.80) >DroSim_CAF1 1154 95 - 1 UCUUGCCGGU------------ACUCAG-UACUCACCAUAUCACUGUUGUGAUGUCGCAGCAAAAUGGCAUUGCCAUAGAGCAAUGUCCUGUGUCCCGAUCCUGUGCC ......(((.------------((.(((-...............(((((((....)))))))....((((((((......))))))))))).)).))).......... ( -27.10) >DroEre_CAF1 1173 107 - 1 UCAUGCCGGUCAAGUGAAAGUGUUCAAG-UACUCACCAUAUCACUGUUGUGAUGGCGCAACAAAAUGGCAUUGCCGUAGAGCAAUGUCCUGUGUCCCGAUCCGGUGCC ....(((((((..((((..(((......-))))))).....((((((((((....)))))))....((((((((......))))))))..)))....)).)))))... ( -31.60) >DroYak_CAF1 1147 107 - 1 UCAUGCCCUUCAAGUGAAACCGAUCAAG-UACUCACCAUAUCACUGUUGUGAUGGCGCAGCAAAAUGGCAUUGCCGUAGAGCAAUGUCCUGUGUCCCGAUCCGGUGCC ((((.........)))).(((((((...-..........(((((....)))))(((((((......((((((((......)))))))))))))))..))).))))... ( -30.80) >DroAna_CAF1 5577 93 - 1 UUUUG---GU------------UUAAAGCCACUCACCAUGUCACUAUUGUGAUGACGGAGCAGAAUGGCAUUGCCGUAGAGCAAUGUCCUGUGUCCGGAUCCAGUUCC ...((---((------------.....))))....((..(((((....)))))...(((((((...((((((((......)))))))))))).))))).......... ( -27.50) >consensus UCUUGCCGGU____________AUCAAG_UACUCACCAUAUCACUGUUGUGAUGGCGCAGCAAAAUGGCAUUGCCAUAGAGCAAUGUCCUGUGUCCCGAUCCGGUGCC ....(((((..............................(((((....)))))(((((((......((((((((......))))))))))))))).....)))))... (-23.08 = -23.97 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:07 2006