Locus 1084

Sequence ID 2R_DroMel_CAF1
Location 4,376,420 – 4,376,539
Length 119
Max. P 0.575301
window1918

overview

Window 8

Location 4,376,420 – 4,376,539
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.33
Mean single sequence MFE -44.26
Consensus MFE -42.40
Energy contribution -42.52
Covariance contribution 0.12
Combinations/Pair 1.07
Mean z-score -1.13
Structure conservation index 0.96
SVM decision value 0.08
SVM RNA-class probability 0.575301
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4376420 119 + 20766785
GUGUGCAUCGCCCGGCUGAUGUUCCAUGCCCAAAAGGAUGCAGAUGGAGCUGGCGAGUCGAAUGUGUCGGCAAAUGCCAAUUGGUAUUGCGGUGGCUUGCCGGUCGGAAUUGUUGCCA-A
.((.(((.((.((((((...(((((((((((....))..)))..)))))).((((((((((.....)).((((.((((....))))))))...))))))))))))))...)).)))))-. ( -44.30)
>DroSec_CAF1 47067 120 + 1
GUGUGCAUCGCCCGGCUGAUGCUCCAUGCCCAAAAGGAUGCAGAUGGAGCUGGCGAGUCGAAUGUGUCGGCAAAUGCCAAUUGGUAUUGCGGUGGCUUGCCGGUCGGAAUUGUUGCCAAA
.((.(((.((.((((((...(((((((((((....))..)))..)))))).((((((((((.....)).((((.((((....))))))))...))))))))))))))...)).))))).. ( -46.70)
>DroSim_CAF1 47680 120 + 1
GUGUGCAUCGCCCGGCUGAUGCUCCAUGCCCAAAAGGAUGCAGAUGGAGCUGGCGAGUCGAAUGUGUCGGCAAAUGCCAAUUGGUAUUGCGGUGGCUUGCCGGUCGGAAUUGUUGCCAAA
.((.(((.((.((((((...(((((((((((....))..)))..)))))).((((((((((.....)).((((.((((....))))))))...))))))))))))))...)).))))).. ( -46.70)
>DroEre_CAF1 43702 120 + 1
GUGUGCAUCGCCCGGCUGAUUCUCCAUGCCCACAAGGAUGCAGAUGGAGCUGGCGAGUCGAAUGUGUCGGCAAAUGCCAAUUGGUAUUGCGGUGGCUUGCCGGUCGGAAUUGUUGCCAAA
.((.(((.((.((((((....((((((((((....))..)))..)))))..((((((((((.....)).((((.((((....))))))))...))))))))))))))...)).))))).. ( -42.60)
>DroYak_CAF1 45521 120 + 1
GUGUGCAUCGCCCGGCUGAUGCUCUACGCCCAAAAGGAUGCAGAUGGAGCUGGCGAGUCGAAUGUGUCGGCAAAUGCCAAUUGGUAUUACGGUGGCUUGUCGGUCGGAAUUGUUGCCAAA
.((.(((.((.(((((((((..(((.((.((....)).)).)))..((((((.((.(((((.....))))).((((((....)))))).)).)))))))))))))))...)).))))).. ( -41.00)
>consensus
GUGUGCAUCGCCCGGCUGAUGCUCCAUGCCCAAAAGGAUGCAGAUGGAGCUGGCGAGUCGAAUGUGUCGGCAAAUGCCAAUUGGUAUUGCGGUGGCUUGCCGGUCGGAAUUGUUGCCAAA
.((.(((.((.((((((...(((((((((((....))..)))..)))))).((((((((((.....)).((((.((((....))))))))...))))))))))))))...)).))))).. (-42.40 = -42.52 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:05 2006