Locus 1075

Sequence ID 2R_DroMel_CAF1
Location 4,368,647 – 4,368,746
Length 99
Max. P 0.999426
window1896 window1897

overview

Window 6

Location 4,368,647 – 4,368,746
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 96.36
Mean single sequence MFE -28.55
Consensus MFE -26.27
Energy contribution -26.80
Covariance contribution 0.53
Combinations/Pair 1.04
Mean z-score -1.62
Structure conservation index 0.92
SVM decision value 1.73
SVM RNA-class probability 0.974257
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4368647 99 + 20766785
AUCAGUUGUUGCCGCAAAUUGAUUCAACAAACGGCAAACAAGUGAAGCCUGGCCAUGAUGGGCCUUCAAUUAAUAGCCAUUCGGAUGGGGCCAGUAAGU
.(((.(((((((((....(((......))).)))).))))).)))...((((((.(((..(((............)))..))).....))))))..... ( -29.30)
>DroSec_CAF1 39134 99 + 1
AUCAGUUGUUGCCGCAAAUUGAUUCAACAAACGGCAAACAAGUGAAGCCUGGCCAUGAUGGGCCUUCAAUUAAUAGCCAUCCGGAUGGGGCCAGUAAGU
.(((.(((((((((....(((......))).)))).))))).)))...((((((.(((.......)))........((((....))))))))))..... ( -29.80)
>DroSim_CAF1 39369 99 + 1
AUCAGUUGUUGCCGCAAAUUGAUUCAACAAACGGCAAACAAGUGAAGCCUGGCCAUGAUGGGCCUUCAAUUAAUAGCCAUCCGGAUGGGGCCAGUAAGU
.(((.(((((((((....(((......))).)))).))))).)))...((((((.(((.......)))........((((....))))))))))..... ( -29.80)
>DroEre_CAF1 35934 99 + 1
AUCAGUUGUUGCCGCAAAUUGAUUCAACAAACGGCAAACAAGUGAAGCCUGGCCAUGAUGGGCCUUCAAUUAAUAGCCAUCCGGAUGGGGCCAGUAAGU
.(((.(((((((((....(((......))).)))).))))).)))...((((((.(((.......)))........((((....))))))))))..... ( -29.80)
>DroYak_CAF1 36976 99 + 1
AUCAGUUGUUGCCGCAAAUUGAUUCAACAAACGGCAAACAAGUGAAGCCUGGCCAUGAUGGGCCUUCAAUUAAUAGCCAUCCGGAUGGGGCCAGUAAGU
.(((.(((((((((....(((......))).)))).))))).)))...((((((.(((.......)))........((((....))))))))))..... ( -29.80)
>DroAna_CAF1 46318 94 + 1
AUCAGUUGUUGCCGCAAAUUGAUUCAACAAACGGCAAACAAGUGAAGCCUGGUCGUGAUGGGCCUUCAAUUAAUAGC----UGGAUU-GGCAAGUAAGU
.(((.(((((((((....(((......))).)))).))))).))).(((.((((......))))((((.........----))))..-)))........ ( -22.80)
>consensus
AUCAGUUGUUGCCGCAAAUUGAUUCAACAAACGGCAAACAAGUGAAGCCUGGCCAUGAUGGGCCUUCAAUUAAUAGCCAUCCGGAUGGGGCCAGUAAGU
.(((.(((((((((....(((......))).)))).))))).))).(((.((((......))))............((((....)))))))........ (-26.27 = -26.80 +   0.53)

alignment

Postscript

secondary structure

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dotplot

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Window 7

Location 4,368,647 – 4,368,746
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 96.36
Mean single sequence MFE -31.33
Consensus MFE -28.27
Energy contribution -29.43
Covariance contribution 1.17
Combinations/Pair 1.00
Mean z-score -2.92
Structure conservation index 0.90
SVM decision value 3.59
SVM RNA-class probability 0.999426
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4368647 99 - 20766785
ACUUACUGGCCCCAUCCGAAUGGCUAUUAAUUGAAGGCCCAUCAUGGCCAGGCUUCACUUGUUUGCCGUUUGUUGAAUCAAUUUGCGGCAACAACUGAU
.....((((((......((..((((.((....)).))))..))..))))))...(((.(((((.(((((..((((...))))..)))))))))).))). ( -31.40)
>DroSec_CAF1 39134 99 - 1
ACUUACUGGCCCCAUCCGGAUGGCUAUUAAUUGAAGGCCCAUCAUGGCCAGGCUUCACUUGUUUGCCGUUUGUUGAAUCAAUUUGCGGCAACAACUGAU
.....((((((.......(((((((.((....)).)).)))))..))))))...(((.(((((.(((((..((((...))))..)))))))))).))). ( -34.00)
>DroSim_CAF1 39369 99 - 1
ACUUACUGGCCCCAUCCGGAUGGCUAUUAAUUGAAGGCCCAUCAUGGCCAGGCUUCACUUGUUUGCCGUUUGUUGAAUCAAUUUGCGGCAACAACUGAU
.....((((((.......(((((((.((....)).)).)))))..))))))...(((.(((((.(((((..((((...))))..)))))))))).))). ( -34.00)
>DroEre_CAF1 35934 99 - 1
ACUUACUGGCCCCAUCCGGAUGGCUAUUAAUUGAAGGCCCAUCAUGGCCAGGCUUCACUUGUUUGCCGUUUGUUGAAUCAAUUUGCGGCAACAACUGAU
.....((((((.......(((((((.((....)).)).)))))..))))))...(((.(((((.(((((..((((...))))..)))))))))).))). ( -34.00)
>DroYak_CAF1 36976 99 - 1
ACUUACUGGCCCCAUCCGGAUGGCUAUUAAUUGAAGGCCCAUCAUGGCCAGGCUUCACUUGUUUGCCGUUUGUUGAAUCAAUUUGCGGCAACAACUGAU
.....((((((.......(((((((.((....)).)).)))))..))))))...(((.(((((.(((((..((((...))))..)))))))))).))). ( -34.00)
>DroAna_CAF1 46318 94 - 1
ACUUACUUGCC-AAUCCA----GCUAUUAAUUGAAGGCCCAUCACGACCAGGCUUCACUUGUUUGCCGUUUGUUGAAUCAAUUUGCGGCAACAACUGAU
...........-....((----(........(((((.((...........))))))).(((((.(((((..((((...))))..))))))))))))).. ( -20.60)
>consensus
ACUUACUGGCCCCAUCCGGAUGGCUAUUAAUUGAAGGCCCAUCAUGGCCAGGCUUCACUUGUUUGCCGUUUGUUGAAUCAAUUUGCGGCAACAACUGAU
.....((((((.......(((((((.((....)).)).)))))..))))))...(((.(((((.(((((..((((...))))..)))))))))).))). (-28.27 = -29.43 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:46 2006