| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,365,952 – 4,366,053 |
| Length | 101 |
| Max. P | 0.718165 |
| Location | 4,365,952 – 4,366,053 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 90.89 |
| Mean single sequence MFE | -21.41 |
| Consensus MFE | -17.35 |
| Energy contribution | -17.86 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.718165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4365952 101 - 20766785 GCUUCUCCUGCUCCGCCAUUCUUUGUAUCCUUCUCCAUCUAUGCCCGAAAUCAGGGCAUUUAUUCAUUUGCGAUAAUCCACUAAGGACUAGCAGCUGCAAU ((.....(((((...((........(((((..........((((((.......))))))..........).)))).........))...)))))..))... ( -21.58) >DroSec_CAF1 36485 99 - 1 --UCCUCCUGCUACGCCAUUCUUUGUAUCCUCCUCCAUCUAUGCCCGAAAUCAGGGCAUUUAUUCAUUUGCGAUAAUCCACUGAGGACUAGCAGCUGCAAU --.....((((((..((........(((((..........((((((.......))))))..........).)))).........))..))))))....... ( -21.68) >DroSim_CAF1 36709 101 - 1 GCUCCUCCUGCUACGCCAUUCUUUGUAUCCGGCUCCAUCUAUGCCCGAAAUCAGGGCAUUUAUUCAUUUGCGAUAAUCCACUGAGGACUAGCAGCUGCAAU ((.....((((((..((........(((((((........((((((.......))))))........))).)))).........))..))))))..))... ( -23.82) >DroYak_CAF1 34484 95 - 1 ------CCUGCUCCUCCAUUCUUUGUAUCCUGCUUCAUCUAUGCCCGAAAUCAGGGCAUUUAUUCAUUUGCGAUAAUCCACUGAGAGCCAGCAUCUGCAAU ------...((((.((.........(((((..........((((((.......))))))..........).)))).......))))))..((....))... ( -18.54) >consensus __UCCUCCUGCUACGCCAUUCUUUGUAUCCUGCUCCAUCUAUGCCCGAAAUCAGGGCAUUUAUUCAUUUGCGAUAAUCCACUGAGGACUAGCAGCUGCAAU .......(((((...((........(((((..........((((((.......))))))..........).)))).........))...)))))....... (-17.35 = -17.86 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:43 2006