Locus 1071

Sequence ID 2R_DroMel_CAF1
Location 4,361,682 – 4,361,780
Length 98
Max. P 0.892331
window1888

overview

Window 8

Location 4,361,682 – 4,361,780
Length 98
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 87.68
Mean single sequence MFE -24.67
Consensus MFE -20.48
Energy contribution -21.07
Covariance contribution 0.59
Combinations/Pair 1.09
Mean z-score -2.51
Structure conservation index 0.83
SVM decision value 0.97
SVM RNA-class probability 0.892331
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4361682 98 + 20766785
--AGCCCACCCACUCAUCCAUCCGUUGCGGUGUUUUUG-UCCAACCAGCUUGUAACUAUUUAAGCGGCAAUUUGUAUUUUAUUGCCAACUUUGGUUGGCUU
--....((((((..(........).)).)))).....(-.((((((((((((........)))))((((((.........)))))).....)))))))).. ( -26.50)
>DroSim_CAF1 32464 98 + 1
--AGCCCACCCACUCAUCCAUCCGUUGCGGUGUUUUUG-UCCAACCAGCUUGUAACUAUUUAAGCGGCAAUUUGUAUUUUAUUGCCAACUUUGGUUGGCUU
--....((((((..(........).)).)))).....(-.((((((((((((........)))))((((((.........)))))).....)))))))).. ( -26.50)
>DroEre_CAF1 29135 98 + 1
--AGCACACCCACUCAUCCAUCCGUUGCGGUGUUUUUG-UCCAACCAGCUUGUAACUAUUUAAGCGGCAAUUUGUAUUUUAUUGCCAACUUUGGUUGGCUU
--...(((((((..(........).)).)))))....(-.((((((((((((........)))))((((((.........)))))).....)))))))).. ( -27.70)
>DroWil_CAF1 49085 79 + 1
-----------------CCGAGCGUUUGUGUGUGUGUAUUUCGACCAGCUUGUAACUAUUUAAGCGGCAAUUUGUAUUUUAUUGCCAACUUUG-----CCU
-----------------....(((...((..................(((((........)))))((((((.........)))))).))..))-----).. ( -14.30)
>DroYak_CAF1 30352 100 + 1
CCAGCCCACCCACUCAUCCAUCCGUUGCGGUGUUUUUG-UCCAACCAGCUUGUAACUAUUUAAGCGGCAAUUUGUAUUUUAUUGCCAACUUUGGUUGGCUU
......((((((..(........).)).)))).....(-.((((((((((((........)))))((((((.........)))))).....)))))))).. ( -26.50)
>DroAna_CAF1 38873 98 + 1
--AGUCCACCCACUCAUCCAUCCGUUGCGGUGUUUUUG-UCCAACCAGCUUGUAACUAUUUAAGCGGCAAUUUGUAUUUUAUUGCCAACUUUGGUUGGCUU
--....((((((..(........).)).)))).....(-.((((((((((((........)))))((((((.........)))))).....)))))))).. ( -26.50)
>consensus
__AGCCCACCCACUCAUCCAUCCGUUGCGGUGUUUUUG_UCCAACCAGCUUGUAACUAUUUAAGCGGCAAUUUGUAUUUUAUUGCCAACUUUGGUUGGCUU
..................((((......))))........((((((((((((........)))))((((((.........)))))).....)))))))... (-20.48 = -21.07 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:38 2006