Locus 1070

Sequence ID 2R_DroMel_CAF1
Location 4,358,237 – 4,358,342
Length 105
Max. P 0.944670
window1887

overview

Window 7

Location 4,358,237 – 4,358,342
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 95.81
Mean single sequence MFE -31.64
Consensus MFE -26.18
Energy contribution -26.82
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -2.03
Structure conservation index 0.83
SVM decision value 1.35
SVM RNA-class probability 0.944670
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4358237 105 + 20766785
UUCUCCAUUUGCGGCUGGCCAGCCAAACGUCGUGCUCUGCUUAUGGUCGCAAUCAAAGCUUAAGCCAUAGCUACGUCCAUAUAAAUGCACGUAUAUGUGGCAAAA
........(((((((((((.((((.......).)))..)))...))))))))...........((((((..(((((.(((....))).)))))..)))))).... ( -30.10)
>DroSec_CAF1 28811 105 + 1
UUCUCCAUUUGCGGCUGGCCAGCCAAACGUCGUGCUCUGCUUAUGGUCGCAAUCAAAGCUUAAGCCAUAGCUACGUCCAUAUAAAUGCACGUAUAUGUGGCAAAA
........(((((((((((.((((.......).)))..)))...))))))))...........((((((..(((((.(((....))).)))))..)))))).... ( -30.10)
>DroSim_CAF1 29072 105 + 1
UUCUCCAUUUGCGGCUGGCCAGCCAAACGUCGUGCUCUGCUUAUGGUCGCAAUCAAAGCUUAAGCCAUAGCUACGUCCAUAUAAAUGCACGUAUAUGUGGCAAAA
........(((((((((((.((((.......).)))..)))...))))))))...........((((((..(((((.(((....))).)))))..)))))).... ( -30.10)
>DroEre_CAF1 25726 104 + 1
UUCCCCAUUUGCGGCUGGCCAGCCAAACGGCGUGCUCCGCUUUUGGUCGCAAUCAAAGCUUAAGCCAUAGCUACGUCCACAUAAAUGCACGUAUAUGUGGGAA-A
((((((((.((((((..((..((((((.((((.....)))))))))).))......((((........))))..............)).)))).))).)))))-. ( -32.00)
>DroYak_CAF1 27083 105 + 1
UUCCCCAUUUGCGGCUGGCCAGCCAAACGGCGUGCUCCGCUUAUGGUCGCAAUCAAAGCUUAAGCCAUAGCUACGUCCGUAUAAAUGCCCGUAUAUGUGGGAAAA
((((((((.(((((((((....))).((((((((....(((.(((((.((.......))....)))))))))))).))))......).))))).))).))))).. ( -35.90)
>consensus
UUCUCCAUUUGCGGCUGGCCAGCCAAACGUCGUGCUCUGCUUAUGGUCGCAAUCAAAGCUUAAGCCAUAGCUACGUCCAUAUAAAUGCACGUAUAUGUGGCAAAA
........(((((((((((.((((.......).)))..)))...))))))))...........((((((..(((((.(((....))).)))))..)))))).... (-26.18 = -26.82 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:37 2006