Locus 1066

Sequence ID 2R_DroMel_CAF1
Location 4,350,352 – 4,350,451
Length 99
Max. P 0.922831
window1881

overview

Window 1

Location 4,350,352 – 4,350,451
Length 99
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 87.85
Mean single sequence MFE -28.23
Consensus MFE -21.38
Energy contribution -21.19
Covariance contribution -0.19
Combinations/Pair 1.05
Mean z-score -2.37
Structure conservation index 0.76
SVM decision value 1.15
SVM RNA-class probability 0.922831
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4350352 99 + 20766785
GGCUGUCGUGGUCAGGGAAAUCGAGGAAAUCGGGGAAAUCGGGGAAAUCGGGG-AAAUCUGGCCGAAAACAGAGGGUGAUGGAGGCCAGAGGGCUGGCUC
..((((..((((((((....((((.....((((.....)))).....))))..-...))))))))...))))...........((((((....)))))). ( -31.30)
>DroSec_CAF1 20895 81 + 1
GGCUGUCGUGGUCAGGGAAAUCGAGGAAAUC------------------GGGG-AAAUCUGGCCGAAAACAGGGGGUGAUGGAGGCCAGAGGGCUGGCUC
..((((..((((((((....((((.....))------------------))..-...))))))))...))))...........((((((....)))))). ( -28.00)
>DroSim_CAF1 21196 81 + 1
GGCUGUCGUGGUCAGGGAAAUCGAGGAAAUC------------------GGGG-AAAUCUGGCCGAAAACAGGGGGUGAUGGAGGCCAGAGGGCUGGCUC
..((((..((((((((....((((.....))------------------))..-...))))))))...))))...........((((((....)))))). ( -28.00)
>DroYak_CAF1 19152 82 + 1
GGCUGUCGUGGUCAGGAAAAUCGAGGAAAUC------------------GGGGAAAAUCUGGCCGAAAACGGGGGGUGAUGGAGGCCAGAGGGCUGGCUC
..((((..((((((((....((((.....))------------------))......))))))))...))))...........((((((....)))))). ( -25.60)
>consensus
GGCUGUCGUGGUCAGGGAAAUCGAGGAAAUC__________________GGGG_AAAUCUGGCCGAAAACAGGGGGUGAUGGAGGCCAGAGGGCUGGCUC
..((((..((((((((....((............................)).....))))))))...))))...........((((((....)))))). (-21.38 = -21.19 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:31 2006