| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,330,045 – 4,330,151 |
| Length | 106 |
| Max. P | 0.991641 |
| Location | 4,330,045 – 4,330,151 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 70.98 |
| Mean single sequence MFE | -36.78 |
| Consensus MFE | -8.40 |
| Energy contribution | -9.76 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.23 |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.991641 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4330045 106 + 20766785 UUUGUUGCGUAAUAAUAUUC---------GCAGCUUGCGGCUAUGCUAAACUAAGCUUAAUCAAAGGGGGGGGGGGGCACCGCCACUACGGUGUUGAUUUCAUUUGUG-CCGCAAC ...((((((..........)---------)))))(((((((...(((......))).....((((....(..(..(((((((......)))))))..)..).)))).)-)))))). ( -35.30) >DroPse_CAF1 28874 110 + 1 UUUG-UGCAUAAUAAUUUUGUGUACAAAAGCCGCCGCUGGCGAUCCGUAAACA-----AAUCAAAGGCAUAAGGUUGGUCCCUUUUGGCGGUGUUGAUUUCAUUUGCGGCUCCCAC ((((-(((((((.....)))))))))))(((....)))((.((.(((((((.(-----((((((.(.((.((((......)))).)).)....)))))))..))))))).)))).. ( -36.30) >DroPer_CAF1 28756 110 + 1 UUUG-UGCAUAAUAAUUUUGUGCACAAAAGCCGCCGAUGGCGAUCCGAAAACA-----AAUCAAAGGCAUACGGCUGGUCCCUUUUGGCGGUGUUGAUUUCAUUUGCGGCUCCCAC ((((-(((((((.....)))))))))))((((((.(((((.((((.((.....-----..))......((((.((..(......)..)).)))).))))))))).))))))..... ( -37.20) >DroEre_CAF1 8420 104 + 1 UUUGUUGCGUAAUAAUAUUC---------GCAGCUUGCGGCGAUGCUAAACUCAGCUUAAUCAAAGGGGA--AGGAGCACCGCCCGCGCGGUGUUGAUUUCAUUUGUG-CCGCAAC ...((((((..........)---------)))))((((((((..(((......))).....((((..(((--(..((((((((....))))))))..)))).))))))-)))))). ( -39.70) >DroYak_CAF1 9435 103 + 1 UUUG-AGCGUAAUAAUAUUC---------GCAGCUUGCGGCGAUGCUAAACUAAGCUUAAUCAAAGGGGA--AGGAGCACCGCCUGCGCGGUGUUGAUUUCAUUUGUG-CCGCAAC ....-.(((..........)---------))...((((((((..(((......))).....((((..(((--(..((((((((....))))))))..)))).))))))-)))))). ( -35.40) >consensus UUUG_UGCGUAAUAAUAUUC_________GCAGCUUGCGGCGAUGCUAAACUAAGCUUAAUCAAAGGGGA__GGGAGCACCGCCUGCGCGGUGUUGAUUUCAUUUGUG_CCGCAAC ...................................(((((((..................................(((((((....)))))))((....))....)).))))).. ( -8.40 = -9.76 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:27 2006