Locus 1062

Sequence ID 2R_DroMel_CAF1
Location 4,328,557 – 4,328,647
Length 90
Max. P 0.726206
window1875

overview

Window 5

Location 4,328,557 – 4,328,647
Length 90
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 84.54
Mean single sequence MFE -26.63
Consensus MFE -19.39
Energy contribution -19.07
Covariance contribution -0.32
Combinations/Pair 1.22
Mean z-score -2.09
Structure conservation index 0.73
SVM decision value 0.41
SVM RNA-class probability 0.726206
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4328557 90 + 20766785
-------CAUUCCGCCCACUGCCAUGUAGGAGCGCGGCUUAUGCAUAAAAUUUAAUCAACAUUUAACCUUAACCAAGCAGGUUAGUGGGCCGAAAUU
-------..(((.(((((((((((((((.((((...)))).))))).....((((.......)))).............)).)))))))).)))... ( -25.30)
>DroSec_CAF1 7800 97 + 1
GCACACACAUUCCGCCCACUGCCAUGUGGGGGCGCGGCUUAUGCAUAAAAUUUAAUCAACAUUUAACCUUAACCAAGCAGGUUAGUGGGCCGAAAUU
.........(((.((((((((((.(((..((..(((.....))).......((((.......))))......))..))))).)))))))).)))... ( -26.90)
>DroEre_CAF1 7032 96 + 1
UCGGCUACUUUUCGCCCACUGCCAUGUGGGGGCGCGGCUUAUGCAUAAAAUUUAAUCAACAUUUAACCCCAACCAAGUGGCUCAGUU-GCCGAAACU
(((((.(((....(((.(((......(((((..(((.....))).......((((.......)))))))))....))))))..))).-))))).... ( -27.70)
>consensus
_C____ACAUUCCGCCCACUGCCAUGUGGGGGCGCGGCUUAUGCAUAAAAUUUAAUCAACAUUUAACCUUAACCAAGCAGGUUAGUGGGCCGAAAUU
.........(((.((((((((..(((((..(((...)))..)))))...................((((.........)))))))))))).)))... (-19.39 = -19.07 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:26 2006