Locus 1053

Sequence ID 2R_DroMel_CAF1
Location 4,315,469 – 4,315,574
Length 105
Max. P 0.513939
window1860

overview

Window 0

Location 4,315,469 – 4,315,574
Length 105
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 82.57
Mean single sequence MFE -27.45
Consensus MFE -19.29
Energy contribution -21.73
Covariance contribution 2.44
Combinations/Pair 1.08
Mean z-score -1.50
Structure conservation index 0.70
SVM decision value -0.04
SVM RNA-class probability 0.513939
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4315469 105 - 20766785
AAAACUGUUU----CUUUAGAGUAAAACAAAGGGCUUGGGGCCUUUGGCAAUGGAAUUUUUAUCCAAAAGCCAGGAGUUUUGUGGCCACUGCAACUGGUGACACUUGCA
...(((.(..----....).))).......(((((((..(((..(((((..((((.......))))...)))))..)))..).)))).))((((.((....)).)))). ( -29.20)
>DroSec_CAF1 70538 109 - 1
AAAAAAGUUUUUUUUUUUAGAGUAAAACAAAGGACUUGGAGCCUUUGGCAAUGGAAUUUUUAUCCACUAGUCAGGGGUUUUGUGGCCACUGCAACUGGUGACACUUGCA
....(((((((((.(((((...))))).)))))))))((((((((((((..((((.......))))...)))))))))))).........((((.((....)).)))). ( -31.40)
>DroSim_CAF1 74122 109 - 1
AAAAAUGUUUUUUUUUUUAGAGUAAAACAAAGGACUUGGAGCCUUUGGCAAUGGAAUUUGUAUCAAAAAGUCAGGGGUUUUGUGGCCACUGCAACUGGUGACACUUGCA
.....((((((.(((....))).))))))..((...(..((((((((((....((.......)).....))))))))))..)...))...((((.((....)).)))). ( -27.70)
>DroEre_CAF1 69859 104 - 1
AAAAAAUGUAUUUUUU----AAUAAAACAAAGGGCUUGGAGCCUUCAGCAAUGGAAUUGUUUUCCAAGAUACAGGGGAU-UGCAUCCACUGGAACUGGUGACAACUGCA
................----..........(((((.....)))))..(((.(((((.....))))).....(((.((((-...)))).)))....((....))..))). ( -21.50)
>consensus
AAAAAAGUUUUUUUUUUUAGAGUAAAACAAAGGACUUGGAGCCUUUGGCAAUGGAAUUUUUAUCCAAAAGUCAGGGGUUUUGUGGCCACUGCAACUGGUGACACUUGCA
...............................((.(.(((((((((((((..((((.......))))...))))))))))))).).))...((((.((....)).)))). (-19.29 = -21.73 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:12 2006