| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,314,889 – 4,314,996 |
| Length | 107 |
| Max. P | 0.723532 |
| Location | 4,314,889 – 4,314,996 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.64 |
| Mean single sequence MFE | -26.40 |
| Consensus MFE | -21.83 |
| Energy contribution | -22.13 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.723532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4314889 107 - 20766785 CGGCGCACAA-ACACAAAGGAUAUCGACUCCCUUUGAGCAGAA-UGAUGCAAUUAUUCACACUUGAUUAAAUACUCAAGAAAAGUGAAAGUGCGUGGAAGGAAGCC---CAU-------- (.((((((..-...((((((..........)))))).(((...-...))).....(((((.(((((........)))))....))))).)))))).)..((....)---)..-------- ( -28.80) >DroGri_CAF1 95406 117 - 1 -GAGGCAGCU-CCACAAAGGAAAUCGACUCCCUUUGAGCAGAA-UGAUGCAAUUAUUCACACUUGAUUAAAUACUCAAGAAAAGUGAAAGUGUGUGGAAGCAAAUGGCGAAUGCAGGGUG -...(((..(-(((((((((..........)))))..(((...-...))).....(((((.(((((........)))))....))))).....))))).((.....))...)))...... ( -24.30) >DroSec_CAF1 69976 107 - 1 CGGCGCACAA-ACACAAAGGAAAUCGACUCCUUUUGAGCAGAA-UGAUGCAAUUAUUCACACUUGAUUAAAUACUCAAGAAAAGUGAAAGUGCGUGGAAGGAAGCU---CAU-------- (.((((((..-.((.((((((.......)))))))).(((...-...))).....(((((.(((((........)))))....))))).)))))).).........---...-------- ( -26.80) >DroWil_CAF1 118948 106 - 1 ---CACACAACACACAAAGGAAAUCGACUCCCUUUGAGCAGAAUUGAUGCAAUUAUUCACACUUGAUUAAAUACUCAAGAAAAGUGAAAGUGCGUGGAAGGAAGUU---CCC-------- ---..(((..(((.((((((..........)))))).(((.......))).....(((((.(((((........)))))....))))).))).)))...((.....---)).-------- ( -21.40) >DroYak_CAF1 71353 107 - 1 CGGCGCACAA-GCACAAAGGAUAUCGACUCCCUUUGAGCAGAA-UGAUGCAAUUAUUCACACUUGAUUAAAUACUCAAGAAAAGUGAAAGUGCGUGGAAGGAAGCU---CAU-------- (.((((((..-((.((((((..........)))))).))....-...........(((((.(((((........)))))....))))).)))))).).........---...-------- ( -28.30) >DroAna_CAF1 77859 100 - 1 CGGCGCACAA-ACACAAAGGAUAUCGACUCCCUUUGAGCAGAA-UGAUGCAAUUAUUCACACUUGAUUAAAUACUCAAGGAAAGUGAAAGUGCGUGGAAGAC------------------ (.((((((..-...((((((..........)))))).(((...-...))).....(((((.(((((........)))))....))))).)))))).).....------------------ ( -28.80) >consensus CGGCGCACAA_ACACAAAGGAAAUCGACUCCCUUUGAGCAGAA_UGAUGCAAUUAUUCACACUUGAUUAAAUACUCAAGAAAAGUGAAAGUGCGUGGAAGGAAGCU___CAU________ ..((((((......((((((..........)))))).(((.......))).....(((((.(((((........)))))....))))).))))))......................... (-21.83 = -22.13 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:11 2006