Locus 1050

Sequence ID 2R_DroMel_CAF1
Location 4,312,400 – 4,312,494
Length 94
Max. P 0.525585
window1857

overview

Window 7

Location 4,312,400 – 4,312,494
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 98.52
Mean single sequence MFE -25.22
Consensus MFE -23.82
Energy contribution -23.98
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -0.82
Structure conservation index 0.94
SVM decision value -0.02
SVM RNA-class probability 0.525585
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4312400 94 + 20766785
GUGGA-AAGUCGUCGCGACUUGUCGUUUUUGUCUCUGACAGUUGGCAAAUGUAGUGAAGUGCAUUGACAAUACCACGAACCAAGUACAGCUUGAC
((((.-((((((...)))))).......(((((..((.((.((.((.......)).)).))))..)))))..))))....((((.....)))).. ( -24.80)
>DroSec_CAF1 67569 94 + 1
GUGGA-AAGUCGUCGCGACUUGUCGUUUUUGUCUCUGACAGUUGGCAAAUGUAGUGAAGUGCAUUGACAAUACCACGAACCAAGUACAGCUUGAC
((((.-((((((...)))))).......(((((..((.((.((.((.......)).)).))))..)))))..))))....((((.....)))).. ( -24.80)
>DroSim_CAF1 71034 94 + 1
GUGGA-AAGUCGUCGCGACUUGUCGUUUUUGUCUCUGACAGUUGGCAAAUGUAGUGAAGUGCAUUGACAAUACCACGAACCAAGUACAGCUUGAC
((((.-((((((...)))))).......(((((..((.((.((.((.......)).)).))))..)))))..))))....((((.....)))).. ( -24.80)
>DroEre_CAF1 66996 95 + 1
GUGGACAAGUCGUCGCGACUUGUCGUUUUUGUCUCUGACAGUUGGCAAAUGUAGUGAAGUGCAUUGACAAUACCACGAACCAAGUACAGCUUGAC
((((((((((((...)))))))))((..(((((..((.((.((.((.......)).)).))))..))))).)))))....((((.....)))).. ( -29.70)
>DroYak_CAF1 68826 95 + 1
GUGGAAAAGUCGUCGCGACUUGUCGUUUUUGUCUCUGACAGUUGGCAAAUGUAGUGAAGUGCAUUGACAAUACCACGAACCAAGUACAGCUUGAC
((((..((((((...)))))).......(((((..((.((.((.((.......)).)).))))..)))))..))))....((((.....)))).. ( -24.80)
>DroAna_CAF1 75423 95 + 1
GUGGAAAAGUCGUCGCGACUUGUCGUUUUUGUCUCUGACAGUUGGCAAAUAUACUGAAGUGCAUUGACAAUACCACGAACCAAGUACAGCUUGAC
((((..((((((...))))))...(((..(((..((..((((..........)))).)).)))..)))....))))....((((.....)))).. ( -22.40)
>consensus
GUGGA_AAGUCGUCGCGACUUGUCGUUUUUGUCUCUGACAGUUGGCAAAUGUAGUGAAGUGCAUUGACAAUACCACGAACCAAGUACAGCUUGAC
((((..((((((...)))))).......(((((..((.((.((.((.......)).)).))))..)))))..))))....((((.....)))).. (-23.82 = -23.98 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:09 2006