Locus 1047

Sequence ID 2R_DroMel_CAF1
Location 4,307,295 – 4,307,396
Length 101
Max. P 0.697660
window1854

overview

Window 4

Location 4,307,295 – 4,307,396
Length 101
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 94.04
Mean single sequence MFE -30.92
Consensus MFE -22.90
Energy contribution -24.30
Covariance contribution 1.40
Combinations/Pair 1.11
Mean z-score -2.29
Structure conservation index 0.74
SVM decision value 0.34
SVM RNA-class probability 0.697660
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4307295 101 + 20766785
GCUCUCAAAGAAAACCGAAGGAUGGGGCCAUCGAGGGG-AGGCAAAUGAAUCUGAAGAUUACGAAUGUCUGCUGUUCGGGCCCCGUCUUCGAAAAUAAGAAU
...............(((((.((((((((..((((.((-(((((..((((((....)))).))..))))).)).)))))))))))))))))........... ( -36.80)
>DroSec_CAF1 62486 100 + 1
GCUCUCAAAGAAAACCGGAGGA-GGGCCCAUCGAGGGG-AGGCAAAUGAAUCUGAAGAUUACGAAUGUCUGCUGUUCGGGCCCCAUCUUCGAAAAUAAGAAU
...............((((((.-((((((...((.((.-(((((..((((((....)))).))..))))).)).)).))))))..))))))........... ( -31.20)
>DroSim_CAF1 65875 100 + 1
GCUCUCAAAGAAAACCGGAGGA-GGGCCCAUCGAGGGG-AGGCAAAUGAAUCUGAAGAUUACGAAUGUCUGCUGUUCGGGCCCCAUCUUCGAAAAUAAGAAU
...............((((((.-((((((...((.((.-(((((..((((((....)))).))..))))).)).)).))))))..))))))........... ( -31.20)
>DroEre_CAF1 61795 97 + 1
GCUCUCAAAGAAAACG--GGGA-GUGGCCAUCGAGGGG-AGGCAAAUGAAUCUGAAGAUUACGAAUGUCUGCUGCUCGGGC-CCAUCUUCGAAAAUAAGAAU
..............((--((((-..((((..((((.((-(((((..((((((....)))).))..))))).)).)))))))-)..))))))........... ( -30.40)
>DroYak_CAF1 63281 99 + 1
GCUCUCCAAGAAAACC--AGGA-GGGCCCAUCAAGGGGAAGGCAAAUGAAUCUGAAGAUUACGAAUGUCUGCUGUUCGGGCCCCAUCUUCGAAAAUAAGAAU
(((((((.........--.)))-)))).......(((((.(((...(((((....((((.......))))...))))).)))...)))))............ ( -25.00)
>consensus
GCUCUCAAAGAAAACCG_AGGA_GGGCCCAUCGAGGGG_AGGCAAAUGAAUCUGAAGAUUACGAAUGUCUGCUGUUCGGGCCCCAUCUUCGAAAAUAAGAAU
...............((((((..((((((...(((.((.(((((..((((((....)))).))..))))).)).)))))))))..))))))........... (-22.90 = -24.30 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:06 2006