| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,302,034 – 4,302,162 |
| Length | 128 |
| Max. P | 0.931024 |
| Location | 4,302,034 – 4,302,134 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 84.11 |
| Mean single sequence MFE | -27.70 |
| Consensus MFE | -18.56 |
| Energy contribution | -19.56 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4302034 100 - 20766785 CAGCCUCCUGCAUCCGCUGAUGAGUGGCCACCUCCAGCCCUCAUCCUGCAUCCACCAUCC-------UACA-GCCGCCAUCCAAGUGGCAACGCACGGCAGACGCCGG ........(((....((.((((((.(((........)))))))))..))...........-------....-(((((.......)))))...)))((((....)))). ( -33.20) >DroSec_CAF1 57271 100 - 1 CAGCCUCCUGCAUCCGCUGAUGAGUGGCCACAUCCAGCCACCAUCCAGCAUCCACCAUCC-------UACA-GCCGCCAUCCAAGUGGCAACGCACGGCAGACGCCGG ........(((....(((((((.(((((........)))))))).))))...........-------....-(((((.......)))))...)))((((....)))). ( -34.70) >DroSim_CAF1 60700 86 - 1 CAGCCUCCUGCAUCCGCUGAUGAGUGGCCACCUCCAGCCAC--------------CAUCC-------UACA-GCCGCCAUCCAAGUGGCAACGCACGGCAGACGCCGG ........(((....(((((((.(((((........)))))--------------)))).-------...)-)).(((((....)))))...)))((((....)))). ( -30.60) >DroEre_CAF1 56690 100 - 1 CAGCCUCCUGCAUCCGCUGAUGAGUGGCCACCUCCAUCCUCCAUUCACAAUCCACCAUCC-------ACCACUCCGCCCUCCAAGUGGCAACGCACGGCAGACGCCG- .........((.((.((((..((((((.................................-------.))))))..........(((....))).)))).)).))..- ( -20.28) >DroYak_CAF1 58097 107 - 1 CAGCCUCCUGCAUCCGCUGAUGAGUGGCCACCUCCAUCCACUAUCCGCCAUCUACCAUCCUGCAUCUACCA-UCCUCCAUCCAAGUAGCAACGCACGGCAGACGCCGG ........(((....((.((((.(((((..................)))))....))))..))..((((..-............))))....)))((((....)))). ( -19.71) >consensus CAGCCUCCUGCAUCCGCUGAUGAGUGGCCACCUCCAGCCACCAUCCACCAUCCACCAUCC_______UACA_GCCGCCAUCCAAGUGGCAACGCACGGCAGACGCCGG ........(((..(((((((((.(((((............................................)))))))))..)))))....)))((((....)))). (-18.56 = -19.56 + 1.00)
| Location | 4,302,064 – 4,302,162 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 83.79 |
| Mean single sequence MFE | -36.51 |
| Consensus MFE | -30.26 |
| Energy contribution | -30.66 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.931024 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4302064 98 - 20766785 GAGGAAGUGGCUACGGGUGUCCAGGGGUCAGCCUCCUGCAUCCGCUGAUGAGUGGCCACCUCCAGCCCUCAUCCUGCAUCCACCAUCC-------UACA-GCCGCC ......((((((..(((((..((((((....)).)))))))))((.((((((.(((........)))))))))..))...........-------...)-))))). ( -39.80) >DroSec_CAF1 57301 98 - 1 GAGGAAGUGGCUACGGGUGUCCAGGGGUCAGCCUCCUGCAUCCGCUGAUGAGUGGCCACAUCCAGCCACCAUCCAGCAUCCACCAUCC-------UACA-GCCGCC ......((((((..(((((..((((((....)).)))))))))(((((((.(((((........)))))))).))))...........-------...)-))))). ( -41.30) >DroSim_CAF1 60730 84 - 1 GAGGAAGUGGCUACGGGUGUCCAGGGGUCAGCCUCCUGCAUCCGCUGAUGAGUGGCCACCUCCAGCCAC--------------CAUCC-------UACA-GCCGCC ......((((((.((((((..((((((....)).))))))))))..((((.(((((........)))))--------------)))).-------...)-))))). ( -37.60) >DroEre_CAF1 56719 99 - 1 GAGGACUUGGCUACGGGUGUCCAGGGGUCAGCCUCCUGCAUCCGCUGAUGAGUGGCCACCUCCAUCCUCCAUUCACAAUCCACCAUCC-------ACCACUCCGCC ..(((..((((((((((((..((((((....)).))))))))).(....).)))))))..))).........................-------........... ( -28.90) >DroYak_CAF1 58127 105 - 1 GAGGAAGUGGCUAGGGGUGUCCAGGGGUCAGCCUCCUGCAUCCGCUGAUGAGUGGCCACCUCCAUCCACUAUCCGCCAUCUACCAUCCUGCAUCUACCA-UCCUCC (((((..(((.((((((((..((((((....)).)))))))))((.((((.(((((..................)))))....))))..))..))))))-))))). ( -34.97) >consensus GAGGAAGUGGCUACGGGUGUCCAGGGGUCAGCCUCCUGCAUCCGCUGAUGAGUGGCCACCUCCAGCCACCAUCCACCAUCCACCAUCC_______UACA_GCCGCC ..(((.(((((((((((((..((((((....)).))))))))).(....).)))))))).)))........................................... (-30.26 = -30.66 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:02 2006