Locus 1043

Sequence ID 2R_DroMel_CAF1
Location 4,296,485 – 4,296,578
Length 93
Max. P 0.888458
window1845

overview

Window 5

Location 4,296,485 – 4,296,578
Length 93
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 81.53
Mean single sequence MFE -22.40
Consensus MFE -15.83
Energy contribution -16.38
Covariance contribution 0.56
Combinations/Pair 1.11
Mean z-score -2.46
Structure conservation index 0.71
SVM decision value 0.95
SVM RNA-class probability 0.888458
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4296485 93 - 20766785
AUCCCCCUCUCCACCGCCAUCGAAGACGCUGCAUUAAAAUCUUAAGCAGCAUAAUCGCUGGACUAGAACCGGCAACAAGCAAAGAUGG--GCAGC
...............((((((......(((((.((((....)))))))))......(((((.......)))))..........))).)--))... ( -24.50)
>DroSec_CAF1 51715 93 - 1
ACCCCCCUCGCCAUCGCCAUCCAAGACGCUGCAUUAAAAUCUUAAGCAGCAUAAUCGCUGGACUAGAACCGGCAACAAGCAAAGAUGA--GCAGC
.........((((((............(((((.((((....)))))))))......(((((.......)))))..........)))).--))... ( -24.50)
>DroSim_CAF1 54979 93 - 1
AUCCCCCUUCCCAUCGCCAUCCAAGACGCUGCAUUAAAAUCUUAAGCAGCAUAAUCGCUGGACUAGAACCGGCAACAAGCAAAGAUGG--GCAGC
......((.((((((............(((((.((((....)))))))))......(((((.......)))))..........)))))--).)). ( -27.90)
>DroEre_CAF1 51179 79 - 1
-------------UCUCCAUCCAAGACGCUGCAUUAAAAUCUUAAGCAGCAUAAUCGCUGGACUAGAACCGGCAACAAGCAAAGAUG---GUAGC
-------------.(((((((......(((((.((((....)))))))))......(((((.......)))))..........))))---).)). ( -23.20)
>DroYak_CAF1 52409 80 - 1
-------------UCUCCGUCCAAGACGCUGCAUUAAAAUCUUAAGCAGCAUAAUCGCUGGACUAGAACCGGCAACAAGCAAAGAUGG--GUAGC
-------------..((((((......(((((.((((....)))))))))......(((((.......)))))..........)))))--).... ( -23.30)
>DroAna_CAF1 58746 80 - 1
-----------CAUUUCAAGCCAAGAAGCUGCAUUAAAAUCUUAAGGAGCAUAAUCGCUGAACUAGAACCAACAACA----GAGAUGAAGGGAAA
-----------((((((.(((......))).........(((.....(((......))).....)))..........----))))))........ ( -11.00)
>consensus
___________CAUCGCCAUCCAAGACGCUGCAUUAAAAUCUUAAGCAGCAUAAUCGCUGGACUAGAACCGGCAACAAGCAAAGAUGG__GCAGC
.................((((......(((((.((((....)))))))))......(((((.......)))))..........))))........ (-15.83 = -16.38 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:58 2006