| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,282,280 – 4,282,371 |
| Length | 91 |
| Max. P | 0.596940 |
| Location | 4,282,280 – 4,282,371 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 69.65 |
| Mean single sequence MFE | -28.55 |
| Consensus MFE | -13.66 |
| Energy contribution | -13.25 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.596940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4282280 91 - 20766785 ----AGAAAUCCUCA----AAUCCUGACAUCCUGGACGUAGUUGGUGUCGGCAAAGCGGCUCAUAAGCAGUAAGCUGCUUAGGAAAUGCAC---------GGGCGCAA ----.....(((...----....(((((((((((....)))..))))))))....(((..((.(((((((....))))))).))..)))..---------)))..... ( -25.90) >DroGri_CAF1 58522 79 - 1 --ACAG----CU--UGCUG-----CCACAU------GGUGGCUGGUGUUG-AAAAGCGGCUCAUAAACAGUAAGCUGCUUAGAAAAUGCAC---------AGGCACCA --.(((----..--..)))-----.....(------((((.((((((((.-..((((((((.((.....)).))))))))....))))).)---------)).))))) ( -28.70) >DroSec_CAF1 43615 91 - 1 ----UGAAAUCCUCA----AAUCCUGACAUCCUGGACGUAGUUGGUGUUGGCAAAGCGGCUCAUAAGCAGUAAGCUGCUUAGGAAAUGAAC---------GGGCGCAA ----...........----....(..((((((((....)))..)))))..)....(((.(((.(((((((....)))))))(........)---------)))))).. ( -22.50) >DroEre_CAF1 43142 95 - 1 AGCCUGGCGUCCUGA----AAUCCUGACGUCCUGGACGUAGUUGGUGUCGGCAAAGUGGCUCAUAAACAGUAAGCUGCUUAGGAAAUGCAC---------GGGCGUAA .(((((((.((((((----....((((((.((...........))))))))....(..(((.((.....)).)))..)))))))...)).)---------)))).... ( -32.10) >DroWil_CAF1 69653 95 - 1 -------CGUCUUGUGUUG-----UCUUAUGUUGGGCGGCGUCGGUGUUG-AAAAGCGGCUCAUAAACAGUAAGCUGCUUAGAAAAUGCAACCACUAGGCAGGCUUUA -------.((((...((((-----(((......)))))))((((((((((-..((((((((.((.....)).))))))))........))).)))).))))))).... ( -26.80) >DroYak_CAF1 44197 93 - 1 --CCUGGCAUCCGGA----AAUCCUGACACCCUGGACGUAGUUGGUGUUGGCAAAGUGGCUCAUAAGCAGUAAGCUGCUUAGGAGAUGCAC---------GGGUGUAA --....(((((((..----....(..((((((((....)))..)))))..)....((..(((.(((((((....))))))).)))..)).)---------)))))).. ( -35.30) >consensus ____UG_CAUCCUGA____AAUCCUGACAUCCUGGACGUAGUUGGUGUUGGCAAAGCGGCUCAUAAACAGUAAGCUGCUUAGGAAAUGCAC_________GGGCGCAA ..........((...........((((((((............))))))))..((((((((.((.....)).))))))))....................))...... (-13.66 = -13.25 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:56 2006