| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,254,260 – 4,254,374 |
| Length | 114 |
| Max. P | 0.566693 |
| Location | 4,254,260 – 4,254,374 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 81.87 |
| Mean single sequence MFE | -33.96 |
| Consensus MFE | -26.31 |
| Energy contribution | -26.42 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4254260 114 + 20766785 UUGGGUA--UUGGGCAUUGGGUAUUGGGUAUUGAGCAUUGGAUAUUGACCAGUCGGCCCGCUGAGGCAGCAGC--GGCAUUCACUCACAGAUGCCUCGGCAUAGAUAUCGAAAUGCAA .......--....(((((.((((((((((.....(.(((((.......)))))).))))(((((((((((...--.))..((.......)))))))))))...))))))..))))).. ( -37.20) >DroSec_CAF1 15808 86 + 1 UU------------------------------GGGCAUUGGAUAUUGACCAGUCGGCCCGCUGAGGCAGCAGC--GGCAUUCACUCACAGAUGCCUCGGCAUAGAUAUCGAAAUGCAA ..------------------------------(((((((((.......)))))..))))(((((((((((...--.))..((.......))))))))))).................. ( -28.60) >DroSim_CAF1 19029 100 + 1 UUGGG----------------UAUUGGGUAUUGGGCAUUGGAUAUUGACCAGUCGGCCCGCUGAGGCAGCAGC--GGCAUUCACUCACAGAUGCCUCGGCAUAGAUAUCGAAAUGCAA ....(----------------((((.(((((((((((((((.......)))))..))))(((((((((((...--.))..((.......)))))))))))...))))))..))))).. ( -36.70) >DroEre_CAF1 15976 100 + 1 UUGGGCA--UUGGGC--------------AUUGGGUAUUGGAUAUUGACCAGUCGGCCCGCUGAGGCAGCAGC--GGCAUUCACUCACAGAUGCCUCGGCAUAGAUAUCGAAAUGCAA ....(((--((((((--------------(((((..............)))))..))))(((((((((((...--.))..((.......)))))))))))...........))))).. ( -34.04) >DroYak_CAF1 16166 93 + 1 U---------UGGGC--------------UUUGGGUAUUGGAUAUUGACCAGUCGGCCCGCUGAGGCAGCAGC--GGCAUUCACUCACAGAUGCCUCGGCAUAGAUAUCGAAAUGCAA .---------.((((--------------(((((..............))))..)))))(((((((((((...--.))..((.......))))))))))).................. ( -29.14) >DroAna_CAF1 16109 102 + 1 UCGGGCACAUUGGCC------------ACAUUGGGCAUUGG----CGGCCAGUCGGCCCGCUGAGGCAGCAGCGCGGCAUUCACUCACAGAUGCCUGGGCAUAGAUAUCGAAAUGCAA ((((((.((.((.((------------.....)).)).)).----..))).(((.((((((((......))))..((((((........)))))).))))...)))..)))....... ( -38.10) >consensus UUGGG_____UGGGC______________AUUGGGCAUUGGAUAUUGACCAGUCGGCCCGCUGAGGCAGCAGC__GGCAUUCACUCACAGAUGCCUCGGCAUAGAUAUCGAAAUGCAA ................................(((((((((.......)))))..))))(((((((((((......))..((.......))))))))))).................. (-26.31 = -26.42 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:52 2006