Locus 1034

Sequence ID 2R_DroMel_CAF1
Location 4,241,758 – 4,241,850
Length 92
Max. P 0.887558
window1835

overview

Window 5

Location 4,241,758 – 4,241,850
Length 92
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 86.02
Mean single sequence MFE -22.80
Consensus MFE -17.09
Energy contribution -17.87
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -2.68
Structure conservation index 0.75
SVM decision value 0.95
SVM RNA-class probability 0.887558
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4241758 92 - 20766785
UUACAACAUAGUGCUGUGUCUAACUGACACUGCUAAUCGAGUUAGAAAACAAAUGCUUGUGCUUUUAGUGUUCUAGCACUAAAC-AACUUCGU
........((((((.(((((.....))))).)).......(((((((.(((((.((....)).))).)).)))))))))))...-........ ( -22.60)
>DroSec_CAF1 3313 91 - 1
UUACAAGAAAAUGCUGUGUCUAACUGACACGGCU--UCAAGAUAGAAUAGAAAUGCUUGUGCUUUUAGUGUUCCAGCACAAAAAAAAAAUCGU
.((((((.....((((((((.....))))))))(--((......)))........)))))).((((.((((....)))).))))......... ( -22.00)
>DroSim_CAF1 4803 93 - 1
UUACAAGAAAAUCCUGUGUCUAACUGACACUGCUCAUCAGGAUAGAAUAGAAAUGCUUGUGCUUUUAGUGCUCCAGCACUAAAAAAAAUUCGU
.((((((...((((((((((.....)))))........)))))....((....)))))))).(((((((((....)))))))))......... ( -23.80)
>consensus
UUACAAGAAAAUGCUGUGUCUAACUGACACUGCU_AUCAAGAUAGAAUAGAAAUGCUUGUGCUUUUAGUGUUCCAGCACUAAAAAAAAUUCGU
.((((((.....((.(((((.....))))).))...((......)).........))))))..((((((((....)))))))).......... (-17.09 = -17.87 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:48 2006