Locus 1032

Sequence ID 2R_DroMel_CAF1
Location 4,241,154 – 4,241,247
Length 93
Max. P 0.765769
window1833

overview

Window 3

Location 4,241,154 – 4,241,247
Length 93
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 73.17
Mean single sequence MFE -35.92
Consensus MFE -14.48
Energy contribution -15.52
Covariance contribution 1.03
Combinations/Pair 1.42
Mean z-score -2.02
Structure conservation index 0.40
SVM decision value 0.51
SVM RNA-class probability 0.765769
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4241154 93 + 20766785
ACGGGUUGCGUCCAUUGCAAUCGUUGUUUUGCU--UUAGCAUCGAAUGUCCACUGAUUG-ACGUCGCCUUGGCGGCACUGUUGCAAUGGGC--CGACC
...(((((.((((((((((((((.((((.....--..)))).)))..(((........)-))(((((....)))))....)))))))))))--))))) ( -38.00)
>DroSec_CAF1 2701 93 + 1
ACGGGUUACGUCCAUUGCAAUCGUCGUUGUGCU--UUAGCACCGCAUGUCCACUGAUUG-ACGUCGCCUUGGCGGCACGGUUGCAAUGGGC--CGACC
...((((..(((((((((((((((.((.((((.--...)))).))..(((........)-))(((((....))))))))))))))))))))--.)))) ( -43.90)
>DroSim_CAF1 4195 93 + 1
ACGGGUUGCGUCCAUUGCAAUCGUCGUUGUGCU--UUAGCACCGCAUGUCCACUGAUUG-ACGUCGCCUUGGCGGCACGGUUGCAAUGGGC--CGAUC
...(((((.(((((((((((((((.((.((((.--...)))).))..(((........)-))(((((....))))))))))))))))))))--))))) ( -45.20)
>DroEre_CAF1 2708 93 + 1
ACGGAUUGCGUCCAUUGCCAUCGUCCCUGUGCU--UUAGCACCGAGUAUCCACUGAUAG-AGCUUGCCUUGGAGGCGUGGCAGUGAGGUGC--CGACC
.(((...((.((.(((((((.((((((.((((.--...))))(((((.((........)-))))))....)).))))))))))))).)).)--))... ( -33.50)
>DroYak_CAF1 2676 93 + 1
ACGGAUUGCGUCCAUUGCCAUCGUCCUUAUGCU--UUAGCAUCGAAUAUGCGCUGAUAG-ACGUUGCCUUGGCGGCUUGGCAGCGAGGUUG--UGACC
...(((.(((.....))).)))((((....(((--((.((((.....))))((((...(-(.(((((....)))))))..))))))))).)--.))). ( -25.80)
>DroAna_CAF1 2691 93 + 1
AAGGGUUACGCCCGCCGCCUUUAUAAACAUGCUCCCCAGCACGGAACG---ACUGGUUCCGAGUCGCAUUGCAG--AUGGCUGCACAGGGCUUCGAUC
..(((.....)))(((((...........((((....))))((((((.---....))))))....))..(((((--....)))))...)))....... ( -29.10)
>consensus
ACGGGUUGCGUCCAUUGCAAUCGUCGUUGUGCU__UUAGCACCGAAUGUCCACUGAUUG_ACGUCGCCUUGGCGGCACGGCUGCAAUGGGC__CGACC
..((.....((((.((((..((((....(((((....)))))....................(((((....)))))))))..)))).)))).....)) (-14.48 = -15.52 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:46 2006