Locus 1025

Sequence ID 2R_DroMel_CAF1
Location 4,229,889 – 4,230,009
Length 120
Max. P 0.564070
window1821

overview

Window 1

Location 4,229,889 – 4,230,009
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.83
Mean single sequence MFE -24.80
Consensus MFE -21.22
Energy contribution -21.14
Covariance contribution -0.08
Combinations/Pair 1.10
Mean z-score -1.32
Structure conservation index 0.86
SVM decision value 0.06
SVM RNA-class probability 0.564070
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4229889 120 - 20766785
GUUAUCUCGUAAGACUAUGCAUAUUGAAUACCGUGUACUGAAUUCAGAGCACAGGCAGUCAUAAUCCAUUAAUUAUGAUGAUAUUACCAGCAACAGUAAAGUUUUAUGUGUGUACAAUAU
((...(.(((((((((.(((..........((((((.(((....))).)))).))..((((((((......))))))))................))).))))))))).)...))..... ( -28.00)
>DroSec_CAF1 41802 120 - 1
GCUAUCUCGUAAGACUAUACAUAUUGAAUACCGUGUACUGAAUUCAGAGCACAGGCAGACAUAAUCCAUUAAUUAUGAUGAUAUUAACAGCAACAGUAAAGUUUUAUGUGUGUACAACAU
((...(.(((((((((.(((..........((((((.(((....))).)))).))....((((((......))))))..................))).))))))))).).))....... ( -24.10)
>DroSim_CAF1 72992 120 - 1
GCUAUCUCGUAAGACUAUGCAUAUUGAAUACCGUGUACUGAAUUCAGAGCACAGGCAGACAUAAUCCAUUAAUUAUGAUGAUAUUAACAGCAACAGUAAAGUUUUAUGUGUGUACAAUAU
((....((....))....))((((((......((((.(((....))).))))..(((.((((((..(.(((....((.((.......)).))....))).)..)))))).))).)))))) ( -25.70)
>DroEre_CAF1 43090 120 - 1
GUUAUCUCGUAAGACUAUGCAUAUUAAAUACCGUGUACUGAAUUUGCAGCACAGGCAGACAUAAUCGAUUAAUUAUGAUGAUAUUACCAGCAACAGUAAAGUUUUAUGUGUGUACAAUAU
((...(.(((((((((.(((..........((.(((.(((......))).)))))....((((((......))))))..................))).))))))))).)...))..... ( -21.90)
>DroYak_CAF1 45179 120 - 1
GCUAUCUCGUAAGACUAUGCAUAUUGAAUAGCGUGUACUGAAUUCACAGCACAGGCAGACAUAAUCCAUUAAUUAUGAUGAUAUUACCAGCAACAGUAAAGUUUUAUGUGUGUACAAUAU
((...(.(((((((((.(((..........((.(((.(((......))).))).))...((((((......))))))..................))).))))))))).).))....... ( -24.30)
>consensus
GCUAUCUCGUAAGACUAUGCAUAUUGAAUACCGUGUACUGAAUUCAGAGCACAGGCAGACAUAAUCCAUUAAUUAUGAUGAUAUUACCAGCAACAGUAAAGUUUUAUGUGUGUACAAUAU
.....(.(((((((((.(((............((((.(((....))).))))..((...((((((......)))))).((.......))))....))).))))))))).).......... (-21.22 = -21.14 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:35 2006