Locus 1022

Sequence ID 2R_DroMel_CAF1
Location 4,224,080 – 4,224,200
Length 120
Max. P 0.519678
window1814

overview

Window 4

Location 4,224,080 – 4,224,200
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.08
Mean single sequence MFE -42.64
Consensus MFE -38.62
Energy contribution -38.86
Covariance contribution 0.24
Combinations/Pair 1.06
Mean z-score -1.12
Structure conservation index 0.91
SVM decision value -0.03
SVM RNA-class probability 0.519678
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4224080 120 - 20766785
UGGGCGUGGCCAACUCCACACCCGAUCUCCUGGUCAACCUGUCGCCAGUCAGGAUGGAGGGUCUCACCUUCAACAUAGCCAUGGCCAAUGCCCUAACGAUAAUUUGCUUGAGCGGAGGAG
.(((.((((......)))).)))..(((((((((((.((((.(....).)))).((((((......)))))).........))))))..((.(...(((....)))...).))))))).. ( -42.10)
>DroSec_CAF1 35932 120 - 1
UGGGCGUGGCCAACUCCACACCCGAUCUCCUGGUCAACCUUUCACCUGCCAGGCUGGAGGGUCUCACCUUCAACAUAGCCAUGGCCAAUGCCCUAACGAUAAUUUGCUUGAGCGGAGGAG
.(((.((((......)))).)))...(((((((....))......(((((((((((((((......))))))..........(((....))).............))))).))))))))) ( -41.20)
>DroSim_CAF1 63642 120 - 1
UGGGCGUGGCCAACUCCACACCCGAUCUCCUGGUCAACCUGUCGCCAGCCAGGCUGGAGGGUCUCACCUUCAACAUAGCCAUGGCCAAUGCCCUAACGAUAAUUUGCUUGAGCGGAGGAG
.(((.((((......)))).)))((((....))))..(((.((((((((((((((((((((.....)))))....))))).)))).......(....)..........)).))))))).. ( -42.10)
>DroEre_CAF1 37451 120 - 1
UGGGCGUGGCCAACUCCACACCCGAUCUCUUGGUCAACCUGUCGCCAGCCAGGCUGGAGGGUCUCACCUUCAACAUAGCCAUGGCCAACGCCCUGACGAUCAUUUGCUUGAGCGGCGGAG
.(((.((((......)))).)))((((....))))...(((((((..((((((((((((((.....)))))....))))).))))(((.((..((.....))...))))).))))))).. ( -46.40)
>DroYak_CAF1 38577 120 - 1
UGGGCGUGGCCAACUCCACACCCGAUCUCUUGGUAAACCUGUCGCCAGCCAGGCUGGAGGGUCUCACCUUUAACAUAGCCAUGGCCAACGCCCUGACGAUCAUUUGCUUGAGCGGGGGAG
.(((.((((......)))).)))...(((.((((.........))))((((((((((((((.....)))))....))))).)))).....(((((....(((......))).)))))))) ( -41.40)
>consensus
UGGGCGUGGCCAACUCCACACCCGAUCUCCUGGUCAACCUGUCGCCAGCCAGGCUGGAGGGUCUCACCUUCAACAUAGCCAUGGCCAAUGCCCUAACGAUAAUUUGCUUGAGCGGAGGAG
.(((((((((((.(((((.....((((....))))..((((.(....).)))).)))))((.....)).............))))).)))))).........(((((....))))).... (-38.62 = -38.86 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:27 2006