| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,347,875 – 1,347,995 |
| Length | 120 |
| Max. P | 0.826211 |
| Location | 1,347,875 – 1,347,995 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.63 |
| Mean single sequence MFE | -28.67 |
| Consensus MFE | -22.11 |
| Energy contribution | -22.12 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.826211 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1347875 120 + 20766785 CCUAAAUUUGCUCAUAAGUGUAAGGAUUUCUGCACCCAAUGGUGUAGAAUACAUUUAUUAAGUCGGUGCACUUAAAAAUGGUUUCCAUCCCCAUAUAUGUACCGAUAUUUGUUGUAUUGG ........(((..(((((((((.....(((((((((....))))))))))))))))))...(((((((((..((...((((...)))).....))..))))))))).......))).... ( -31.70) >DroSec_CAF1 66196 108 + 1 CCUAAAUUUGCUCAUAAGUGUGAGGAUUUCUGCACCAGUUGGUGUAGAAUAUAUUUAUUAGAUCGGUGUACUUCAAAAUGGUUUCCAU------------ACCGAUAUUUGUUGUAUUAU .((((.....(((((....)))))...(((((((((....)))))))))........))))(((((((((((.......)))....))------------)))))).............. ( -28.10) >DroSim_CAF1 44354 108 + 1 CCUAAAUUUGCUCAUAAGUGUGAGGAUUUCUGCACCCGUUGGUGUAGAAUAUAUUUCUUAGAUCAGUGUACUUCAAAAUGGUUUCCAU------------ACCGAUAUUUGUUGUAUUGG ......((((..(((..((.((((((.(((((((((....))))))))).....)))))).))..))).....))))((((...))))------------.(((((((.....))))))) ( -26.20) >consensus CCUAAAUUUGCUCAUAAGUGUGAGGAUUUCUGCACCCGUUGGUGUAGAAUAUAUUUAUUAGAUCGGUGUACUUCAAAAUGGUUUCCAU____________ACCGAUAUUUGUUGUAUUGG ........(((..(((((((((.....(((((((((....))))))))))))))))))...((((((..........((((...))))............)))))).......))).... (-22.11 = -22.12 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:11 2006