| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,215,763 – 4,215,883 |
| Length | 120 |
| Max. P | 0.659887 |
| Location | 4,215,763 – 4,215,883 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.75 |
| Mean single sequence MFE | -43.50 |
| Consensus MFE | -40.03 |
| Energy contribution | -39.90 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.659887 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4215763 120 + 20766785 UACGGGAAGUCUGGGUCCACUAAUUGCCAACGUGGCGAUGGCAUUGCACGGAUAUCCCAGGAUGGCCUACGCCUCAGCCAUUGGAGGACCCUUCUUCAGUGAGUAUUGUGUGUGCCAAUU ...((((.(((((.((......((((((.....))))))......)).))))).))))....((((.(((((....((((((((((((...)))))))))).))...))))).))))... ( -44.10) >DroSec_CAF1 27320 120 + 1 UACAGGAAGUCUGGGUCCGCUAAUUGCCAACGUGGCGAUGGCCUUGCACGGAUAUCCCAAGAUGGCCUACGCCUCAGCCAUUGGAGGACCCUUCUUUAGUGAGUAUUGUGUGUGCCAAUU .....((((...((((((.(((((.((....(.((((..((((......((....))......))))..)))).).)).))))).))))))..))))..((.((((.....))))))... ( -40.70) >DroEre_CAF1 29097 120 + 1 CACAGGUAGUCUGGGUCCGCUAAUUGCCAACGUGGCGAUGGCCUUGCACGGAUAUCCCAAGAUGGCCUACGCCUCGGCCAUCGGAGGACCCUUCUUCAGUGAGCGUUGUGCGUGCCAAUU ....(((.....((((((.((....(((.....)))(((((((......((.....))..((.(((....)))))))))))))).))))))...........(((.....)))))).... ( -44.20) >DroYak_CAF1 29966 120 + 1 CACAGGAAGUCUGGGUCCGCUAAUUGCCAACCUGGCGAUGGCCUUGCACGGAUAUCCCAAAAUGGCCUACGCCUCAGCCAUUGGAGGACCCUUCUUCAGUGAGCAUUGUGCGUGCCAAUU (((..((((...((((((.(((((.((......((((..((((......((....))......))))..))))...)).))))).))))))..)))).))).((((.....))))..... ( -45.00) >consensus CACAGGAAGUCUGGGUCCGCUAAUUGCCAACGUGGCGAUGGCCUUGCACGGAUAUCCCAAGAUGGCCUACGCCUCAGCCAUUGGAGGACCCUUCUUCAGUGAGCAUUGUGCGUGCCAAUU (((..((((...((((((.(((((.((......((((..((((......((....))......))))..))))...)).))))).))))))..)))).))).((((.....))))..... (-40.03 = -39.90 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:09 2006