| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,208,124 – 4,208,220 |
| Length | 96 |
| Max. P | 0.659845 |
| Location | 4,208,124 – 4,208,220 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 83.38 |
| Mean single sequence MFE | -26.55 |
| Consensus MFE | -20.21 |
| Energy contribution | -20.77 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.659845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4208124 96 - 20766785 GGCGGAAUUAUGGGAGAGAGACUCUG-AUCUCCGGAGAUUAGUAAAAUCAACUAAUAGCUC--------------UCAACAAAUUCAAUUCUCUUCCGAUCGG-CAGCACUU .((.((....((((((((((.(((((-.....)))))((((((.......)))))).....--------------.............)))))))))).)).)-)....... ( -25.60) >DroSec_CAF1 19849 111 - 1 UGCGAUAUUACGGGAGAGAGCCUCUGAAUCUCCGGAGAUUAGUAAAAUCUACUAAUUGCUCCCCAACGACUUCGCUCAACAAAUUCAAUUCUCUUCCGAUCGG-CAGCACUU ((((((....((((((((((....(((((....(((((((((((.....)))))))..))))....((....))........))))).))))))))))))).)-))...... ( -28.20) >DroSim_CAF1 46108 111 - 1 GGCGAUAUUACAGGAGAGAGCCUCUGAAUCUCCGGAGAUUAGUAAAAUCAACUAAUAGCUCCCCAACGGCUUCGCUCAACAAAUUCAAUUCUCUUCCGAUCGG-CAGCACUU (.((((.....(((((((((((((((......)))))((((((.......)))))).))))......(((...))).............))))))...)))).-)....... ( -24.90) >DroYak_CAF1 22374 110 - 1 GGCGAUGUUAUGGGAGAGAGACUCUG-AUC-CCGGAGAUUAUUAAAUUCACUUAAUAGCUCCCAAUCGUAUUCGCUCAACAAAUUCACUUCUCUUCCGAUCGAUCGGCACUU (.((((....((((((((((.....(-((.-..((((.(((((((......)))))))))))..)))((....)).............))))))))))....)))).).... ( -27.50) >consensus GGCGAUAUUACGGGAGAGAGACUCUG_AUCUCCGGAGAUUAGUAAAAUCAACUAAUAGCUCCCCAACG_CUUCGCUCAACAAAUUCAAUUCUCUUCCGAUCGG_CAGCACUU ..((((....((((((((((.(((((......)))))((((((.......))))))................................)))))))))))))).......... (-20.21 = -20.77 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:50 2006