| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,203,772 – 4,203,892 |
| Length | 120 |
| Max. P | 0.828890 |
| Location | 4,203,772 – 4,203,892 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.42 |
| Mean single sequence MFE | -37.92 |
| Consensus MFE | -29.58 |
| Energy contribution | -29.70 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.828890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4203772 120 + 20766785 UGGAUGGGGUCUGACAGACAACAACAGCGGCAUGUCCAACUACCUGAACUGCGUCGAUGUCCAGAUUAUUGACAACAACGACUGCCGCAACUACUACGGUAGCAACUACAUCACCGACAA ..((((..((.((.............((((((.(((((......))......(((((((.......)))))))......)))))))))..((((....))))))))..))))........ ( -33.30) >DroSec_CAF1 15581 120 + 1 UGGAUGGGGUCUGACCGACAACAACAGCGGCAUGUCCAACUACCUGAACAGCGUCGAUGUCCAGAUCAUGGACAACAACGACUGCCGCAACUACUACGGUGGCAACUACGUCAUCGACAA (((.((..(((.....)))..))...(((((((((.((......)).)))..((((.((((((.....))))))....))))))))))..)))...(((((((......))))))).... ( -39.10) >DroSim_CAF1 41427 120 + 1 UGGAUGGGGUCUGACCGACAACAACAGCGGCAUGUCCAACUACCUGAACAGCGUCGAUGUCCAGAUCAUGGACAACAACGACUGCCGCAACUACUACGGUGGCAACUACGUUAUCGACAA (((.((..(((.....)))..))...(((((((((.((......)).)))..((((.((((((.....))))))....))))))))))..)))...(((((((......))))))).... ( -37.00) >DroYak_CAF1 17769 120 + 1 UGGCUGGGGUCUGACCGACAACAACAGCGGCAUGUCCAACUACCUGAACAGCGUGGAUGUCCAGAUCGCGGACAACAACGACUGCCGCAACUACUACGGUGGCAACUACGUCACCGACAA ((..((..(((.....)))..)).))((((((.(((...((((((....)).)))).(((((.......))))).....)))))))))........(((((((......))))))).... ( -43.00) >DroAna_CAF1 13780 120 + 1 CGGAUGGGGCCGCACUGAUAACGACAGUGGCAUGUCCAACUACCUCAACUGUGUGGAUGUCCAGGUCAUGGACAACAACGAUUGUCGCAACUACUUUGGCGGCUACUACAUCACUGACAA ..((((.((((((........(((((((.(..(((....(((((......).)))).((((((.....))))))))).).)))))))(((.....)))))))))....))))........ ( -37.20) >consensus UGGAUGGGGUCUGACCGACAACAACAGCGGCAUGUCCAACUACCUGAACAGCGUCGAUGUCCAGAUCAUGGACAACAACGACUGCCGCAACUACUACGGUGGCAACUACGUCACCGACAA ..(.((..(((.....)))..)).).((((((.(((((......))......((.(.((((((.....)))))).).)))))))))))........(((((((......))))))).... (-29.58 = -29.70 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:45 2006