Locus 100

Sequence ID 2R_DroMel_CAF1
Location 1,347,312 – 1,347,431
Length 119
Max. P 0.997530
window210

overview

Window 0

Location 1,347,312 – 1,347,431
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.21
Mean single sequence MFE -41.50
Consensus MFE -33.54
Energy contribution -35.16
Covariance contribution 1.62
Combinations/Pair 1.08
Mean z-score -3.03
Structure conservation index 0.81
SVM decision value 2.88
SVM RNA-class probability 0.997530
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1347312 119 + 20766785
CUGGCAAAGUUUCGGCCCGGCCAUCAUAAACGUCAGAGGACCCUUUGCCAUAAUAGCCCCGAAAACUUGGAA-GGGGGCAUAUUAAUGGUGCCCGGGCUGACACAUUGUAAAUUCAAAUG
...((((.((.(((((((((.((((((....(.(((((....))))).).((((((((((............-.))))).))))))))))).))))))))).)).))))........... ( -47.42)
>DroSec_CAF1 65620 118 + 1
CUGGCAAAGUUUCGGCCCGGCCAUCAUAAACGUCCGAGGACCCUCUGCCACAAUAGCCCCGAA-ACCUGGGA-GGAGGCAUAUUAAUGGUGCCCGGGCUGACACAUUGUAAAUUCAAAUG
...((((.((.(((((((((.((((((....(((....)))(((((((.......))((((..-...)))).-))))).......)))))).))))))))).)).))))........... ( -43.90)
>DroSim_CAF1 43784 118 + 1
CUGGCAAAGUUUCGGCCCGGCCAUCAUAAACGUCAGAGGACCCUCUGCCACAAUAGCCCCGAA-ACCUGGGA-GGAGGCAUAUUAAUGGUGCCCGGGCUGACACAUUGUAAAUUCAAAUG
...((((.((.(((((((((.((((((....(.(((((....))))).)..(((((((((...-........-)).))).)))).)))))).))))))))).)).))))........... ( -45.60)
>DroEre_CAF1 46710 115 + 1
CUGGCAAAGUUUCGGGCCGACCACCAUAAACGUCAGAGGACCCU-UGCCACAAUAGCCCCAAA-ACGGGG---GGAGGCAUAUUAAUGGUGCCCGGGCUGACACAUUGUAAAUUCAAAUG
...((((.((.((((.(((..((((((....(((....)))...-((((.(.....((((...-..))))---.).)))).....))))))..))).)))).)).))))........... ( -38.10)
>DroYak_CAF1 34195 104 + 1
CCGGCAAAGUUUCGGACCGGCCAUCAUAAACGUCAG---------------AAUAGCCCCGAA-ACCUGGGAGUAAGGCAUAUUAAUGGUGCCCGGUCUGACACAUUGUAAAUUCAAAUG
...((((.((.(((((((((.((((((.((.(((..---------------....((((((..-...)))).))..)))...)).)))))).))))))))).)).))))........... ( -32.50)
>consensus
CUGGCAAAGUUUCGGCCCGGCCAUCAUAAACGUCAGAGGACCCU_UGCCACAAUAGCCCCGAA_ACCUGGGA_GGAGGCAUAUUAAUGGUGCCCGGGCUGACACAUUGUAAAUUCAAAUG
...((((.((.(((((((((.((((((....(.(((((....))))).)..(((((((((.............)).))).)))).)))))).))))))))).)).))))........... (-33.54 = -35.16 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:08 2006