Locus 999

Sequence ID 2L_DroMel_CAF1
Location 2,884,320 – 2,884,425
Length 105
Max. P 0.969762
window1598

overview

Window 8

Location 2,884,320 – 2,884,425
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 95.24
Mean single sequence MFE -36.78
Consensus MFE -32.60
Energy contribution -32.60
Covariance contribution 0.00
Combinations/Pair 1.19
Mean z-score -1.70
Structure conservation index 0.89
SVM decision value 1.65
SVM RNA-class probability 0.969762
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2884320 105 - 22407834
AUAGUUUCGACUGAUUUGCAUCGCAAGUGGGUGGAGAACAGGAUGCGGGCAAACCGGAACCGGUUGCAAGUGAGUGCAGAUAGUGCCUGGCUGCUAACGUGGCCU
....((((.(((.((((((...)))))).))).)))).........((((((((((....)))))(((......)))......)))))(((..(....)..))). ( -39.30)
>DroSec_CAF1 3046 105 - 1
AUAGUUUCGUCUGAUUUGCAUCGCAUGUGGGUGGAGAACAGGAUGCGAGCAAACCGGAACCGGUUGCAAGUGAGUGCAGAAAGUGCCUGGCUGCUAACGUGGCCU
...((....(((((((..(.((((((.(..((.....)).).))))))((((.(((....)))))))..)..))).))))....))..(((..(....)..))). ( -39.00)
>DroSim_CAF1 3106 105 - 1
AUAGUUUCGUCUGAUUUGCAUCGCAAGUGGGUGGAGAACAGGAUGCGAGCAAACCGGAACCGGUUGCAAGUGAGUGCAGAAAGUGCCUGGCUGCUAACGUGGCCU
...((....(((((((..(.(((((.....((.....))....)))))((((.(((....)))))))..)..))).))))....))..(((..(....)..))). ( -36.20)
>DroEre_CAF1 3055 105 - 1
AUAGUUUCGUCUGAUUUGCAUCGCGAGUGGGUGGAGAACAGGAUGCGAUCAAACCGGAACCGGUUGCAAGUGAGUGCAGAUAGUGUCUGGUUGCUAACGUGGCCU
....(((((.((.((((((...)))))).)))))))....((((((.(((.(((((....)))))(((......))).))).))))))(((..(....)..))). ( -34.60)
>DroYak_CAF1 3140 105 - 1
AUAGUUUCAUCUGAUUUGCAUCGCAAGUGGGUGGAGAACAGGAUGCGAGCCAGCCGGAACCGGUUGCAAGUGAGUGCAGAUAGUGUCUGGUUGCUAACGUGGCCU
........((((((((..(.(((((.....((.....))....)))))((.(((((....)))))))..)..))).))))).......(((..(....)..))). ( -34.80)
>consensus
AUAGUUUCGUCUGAUUUGCAUCGCAAGUGGGUGGAGAACAGGAUGCGAGCAAACCGGAACCGGUUGCAAGUGAGUGCAGAUAGUGCCUGGCUGCUAACGUGGCCU
........((((((((..(.(((((.....((.....))....)))))((.(((((....)))))))..)..))).))))).......(((..(....)..))). (-32.60 = -32.60 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:36 2006