Locus 998

Sequence ID 2L_DroMel_CAF1
Location 2,883,748 – 2,883,846
Length 98
Max. P 0.600383
window1597

overview

Window 7

Location 2,883,748 – 2,883,846
Length 98
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 79.52
Mean single sequence MFE -21.65
Consensus MFE -11.98
Energy contribution -13.72
Covariance contribution 1.75
Combinations/Pair 1.17
Mean z-score -2.04
Structure conservation index 0.55
SVM decision value 0.13
SVM RNA-class probability 0.600383
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2883748 98 - 22407834
AGUAUGUGUAUUCGAAACUAAUGGGUGUAC-----UUGAUUGUAUAGAUAUAGAU-----AUAUAUACCAUCUACCUGUCAACUCCAUUACUGCUUAAUUAUAUAUAC
.(((((((((........((((((((((((-----......)))))(((((((((-----.........)))))..))))...))))))).........))))))))) ( -19.13)
>DroSim_CAF1 2531 100 - 1
AGUAUGUGUAUUCAAAACUAAUGGGUGUAC-----UUGAUUCUAUAUAUAUAGAU-GU--AUAUAUACCAUUUACCUGUCAACUCCAUUACUGCUUAAUUAUAUAUAC
.(((((((((........((((((((..((-----..(((..(((((((((....-))--)))))))..))).....))..)).)))))).........))))))))) ( -18.53)
>DroEre_CAF1 2547 108 - 1
AGUCUGUGUAUUCAAAGCUAAUGGAAGUACACCUAUAGAUUGUAUAUGUACAUAUAGUACAUAUAGAGGGUCGCCCUGUCAACUCCAUUACUCCCAAAUUAUAUAUAC
.((.((((((.....((.(((((((.((..............(((((((((.....))))))))).((((...))))....))))))))))).......)))))).)) ( -23.00)
>DroYak_CAF1 2583 103 - 1
AACCUGUGUGUUCAAAACUAAUGGGUGUAC-----UUGAUUGUACAUAUGUAUAAAGUACAUAGAGAGGGUCGCCCUGUCAACUCCAUUAAUGCUAAAUUAUAUAUAC
....(((((((.......((((((((((((-----((...(((((....))))))))))))).((.((((...)))).))....))))))..........))))))). ( -25.93)
>consensus
AGUAUGUGUAUUCAAAACUAAUGGGUGUAC_____UUGAUUGUAUAUAUAUAGAU_GU__AUAUAGACCAUCGACCUGUCAACUCCAUUACUGCUAAAUUAUAUAUAC
.(((((((((........(((((((.((.........((((.(((((((...........))))))).)))).........))))))))).........))))))))) (-11.98 = -13.72 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:35 2006