| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,869,166 – 2,869,278 |
| Length | 112 |
| Max. P | 0.573263 |
| Location | 2,869,166 – 2,869,278 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 83.07 |
| Mean single sequence MFE | -32.97 |
| Consensus MFE | -25.31 |
| Energy contribution | -25.53 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.573263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2869166 112 + 22407834 A-GGUUUAAGUGACGACGGCCGAUCGCUUGUCACGAUUCUUUCCACGUGUUAUGGAGCGUGCCUUGAAUGCAGCAGCAUUCACAAGGUGCUGCAAAAG-CAAC--AAAUAUAA-AUA .-.((((..((((((((((....))).))))))).......((((.......))))(((..((((((((((....)))))))..)))..).))..)))-)...--........-... ( -32.30) >DroGri_CAF1 15404 109 + 1 A-GGUUUAUGUGACGACGGCCGAGCGCUUGUCGCGAUUCUUGCCACGUGCCACGGAACGUGCCUUGAAAGCGGCGGCAUUCAUCAGAUGCUGCACAUGGAA-----AAG--AAUAUA .-......((((((((((......)).))))))))((((((.(((.((((..........(((.(....).)))((((((.....)))))))))).)))..-----)))--)))... ( -33.30) >DroSec_CAF1 4105 110 + 1 A-GGCUUAAGUGACGACGGCCGAUCGCUUGUCACGAUUCUUUCCACGUGUUAUGGAGCGUGCCUUGAAUGCAGCAGCAUUCACAAGGUGCUGCAAAAG-CAAC--AAAU--AA-AUA .-.((((..((((((((((....))).))))))).......((((.......))))(((..((((((((((....)))))))..)))..).))..)))-)...--....--..-... ( -34.70) >DroSim_CAF1 4216 110 + 1 A-GGCUUAGGUGACGACGGCCGAUCGCUUGUCACGAUUCUUUCCACGUGUUAUGGAGCGUGCCUUGAAUGCAGCAGCAUUCACAAGGUGCUGCAAAAG-CAAC--AAAU--AA-AUA .-.((((..((((((((((....))).))))))).......((((.......))))(((..((((((((((....)))))))..)))..).))..)))-)...--....--..-... ( -34.50) >DroWil_CAF1 7736 110 + 1 --GUUUUAAGUGACAACUGCCGAGCGUUUGUCACGGUUCUUGCCACGUGAAAUAGAACGUGCCUUGAAGGCGGCAGCAUUGACCAGAUGCUAAAAAAA-AAAA--AGACA-AA-AUC --(((((..(((((((.(((...))).))))))).......(((((((........))))(((.....))))))((((((.....)))))).......-...)--)))).-..-... ( -32.50) >DroYak_CAF1 4305 113 + 1 AGGGUUUAAGUGACGACGGCCGAUCGCUUGUCGCGAUUCUUUCCACGUGUUAUGGAGCGUGCCUUGAAUGCAGCAGCAUUCACAAGGUGCUAAAAGGG-CAAAUAAAAU--AA-AAA ...(((.....)))....(((((((((.....))))))..(((((.......))))).(..((((((((((....)))))))..)))..)......))-).........--..-... ( -30.50) >consensus A_GGUUUAAGUGACGACGGCCGAUCGCUUGUCACGAUUCUUUCCACGUGUUAUGGAGCGUGCCUUGAAUGCAGCAGCAUUCACAAGGUGCUGCAAAAG_CAAC__AAAU__AA_AUA .........(((((((((......)).))))))).((((....(((((........)))))....))))...((((((((.....))))))))........................ (-25.31 = -25.53 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:31 2006