Locus 994

Sequence ID 2L_DroMel_CAF1
Location 2,867,719 – 2,867,826
Length 107
Max. P 0.846742
window1592

overview

Window 2

Location 2,867,719 – 2,867,826
Length 107
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 92.21
Mean single sequence MFE -23.65
Consensus MFE -21.43
Energy contribution -21.49
Covariance contribution 0.06
Combinations/Pair 1.17
Mean z-score -1.43
Structure conservation index 0.91
SVM decision value 0.77
SVM RNA-class probability 0.846742
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2867719 107 + 22407834
ACUUACCUAGUUUAGCAUGCGUUUUGCACAGGUUUUGCUCAAUGCUCAAUUAUUAGUUUACACAUCACACGCGAGGUGGGUCCUAGCACCCGCCUUUCUAUCCUCAA
......(((((.......(((((..(((.......)))..)))))......)))))..............(.(((((((((......))))))))).)......... ( -23.92)
>DroSec_CAF1 2655 107 + 1
ACUUACCUAGUUUAGUAUGCGUUUUGCACAGGUUUUGCUCAAUGCUCAAUUAUUAGUUUACACAUCACACGUGAGGUGGGUCCUAGCACUCGCCUCCCUAUCCUCAA
......(((((.......(((((..(((.......)))..)))))......)))))..............(.(((((((((......))))))))).)......... ( -22.62)
>DroSim_CAF1 2748 107 + 1
ACUUACCUAGUUUAGCAUGCGUUUUGCACAGGUUUUGCUCAAUGCUCAAUUAUUAGUUUACACAUCACACGCGAGGUGGGUCCUAGCACCCGCCUCCCUAUCCUCAA
......(((((.......(((((..(((.......)))..)))))......)))))................(((((((((......)))))))))........... ( -25.72)
>DroEre_CAF1 2683 107 + 1
ACUUACCUAGUUUAGCAUGCGUUUUGCACAGGUUUUGCUCAAUGCUCAAUUAUUAGUUUACACAUCACACGCGAGGUGGGUCCUAGCACCUGCCUCCCUAUCCUCAA
......(((((.......(((((..(((.......)))..)))))......)))))................((((..(((......)))..))))........... ( -22.92)
>DroYak_CAF1 2767 107 + 1
ACUUACCUAGUUUAGCAUGCGUUUUGCACAGGUUUUGCUCAAUGCUCAAUUAUUAGUUUACACAUCACACGCGAGGUGGGUCCUAGCACCCGCCUCCCUAUCCUCAA
......(((((.......(((((..(((.......)))..)))))......)))))................(((((((((......)))))))))........... ( -25.72)
>DroAna_CAF1 2910 102 + 1
ACUUA-CUAGUUUAGAAUGCGUUCAGCACACUAUUUGCUCAAUGCUCAAUUAUUAGUUUAUGCAUCACAAGUG-GGCCGGUCCUC-CACCCG--UUCCCAUCCUCAA
....(-(((((.......(((((.((((.......)))).)))))......)))))).............(((-((.(((.....-...)))--..)))))...... ( -21.02)
>consensus
ACUUACCUAGUUUAGCAUGCGUUUUGCACAGGUUUUGCUCAAUGCUCAAUUAUUAGUUUACACAUCACACGCGAGGUGGGUCCUAGCACCCGCCUCCCUAUCCUCAA
......(((((.......(((((..(((.......)))..)))))......)))))..............(.(((((((((......))))))))).)......... (-21.43 = -21.49 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:30 2006