| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,867,190 – 2,867,292 |
| Length | 102 |
| Max. P | 0.774555 |
| Location | 2,867,190 – 2,867,292 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 84.12 |
| Mean single sequence MFE | -25.13 |
| Consensus MFE | -23.82 |
| Energy contribution | -23.60 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.774555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2867190 102 + 22407834 AGGUCUGCGGACAUCCCUACGAGAUCGAAAAGUCCAAAAAGUAAGUGCCAUUUGCAAAUAGGGAAAUGGGUCACCGCCACAUAGCUAUCAGUUAGACCAUUU-------------- .(((((((.((..((((((((....)).............((((((...))))))...)))))).((((((....))).))).....)).).))))))....-------------- ( -24.10) >DroSec_CAF1 2120 108 + 1 AGGUCUGCGGACAUCCCUACGAGAUCGAGAAGUCCAAAAAGUAAGUGCUAUUUGCAA--------AUGGGUCACCGCGACAUAGCUAUCAGCUAGACCAUUUUAAUGAUAAGAACU .(((((((((((.((....((....)).)).))))...........(((((((((..--------..((....)))))).))))).....)).))))).................. ( -26.50) >DroSim_CAF1 2214 107 + 1 AGGUCUGCGGACAUCCCUACGAGAUCGAGAAGUCCAAAAAGUAAGUGCCAUUUGCAA--------AUGGGUCACCGCGACAUAGCUAUCAGCUAGACCAUU-UAAUGAUAAGAACU .(((((((((....(((..((....)).............((((((...))))))..--------..)))...)))))...((((.....))))))))...-.............. ( -24.80) >consensus AGGUCUGCGGACAUCCCUACGAGAUCGAGAAGUCCAAAAAGUAAGUGCCAUUUGCAA________AUGGGUCACCGCGACAUAGCUAUCAGCUAGACCAUUUUAAUGAUAAGAACU .((((.((((....(((..((....)).............((((((...))))))............)))...))))....((((.....)))))))).................. (-23.82 = -23.60 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:29 2006