Locus 992

Sequence ID 2L_DroMel_CAF1
Location 2,862,649 – 2,862,746
Length 97
Max. P 0.633290
window1590

overview

Window 0

Location 2,862,649 – 2,862,746
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 77.38
Mean single sequence MFE -13.68
Consensus MFE -10.87
Energy contribution -10.67
Covariance contribution -0.20
Combinations/Pair 1.18
Mean z-score -1.12
Structure conservation index 0.79
SVM decision value 0.21
SVM RNA-class probability 0.633290
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2862649 97 + 22407834
CUAGUGCUAUUUUUGUUACAAUACACUACAACAGAAGAUAGUGCUGCCCCAAAAAAAAAAAAAAAAGAAAGAUAUAAACGCAAAACUAUUGGAUAUG
.(((..(((((((((((............))))).))))))..)))..((((....................................))))..... ( -11.52)
>DroSec_CAF1 13126 85 + 1
CUGGUGCUAUUUUCGUUACAAUA-----AAACAGAAGAUAGUGCUGCCCCCAAAA-----AA--ACAAAAGAUAUAAACGCAAAACUAUUGGAUAUG
..((..(((((((((((......-----.))).))))))))..))....((((..-----..--........................))))..... ( -13.79)
>DroSim_CAF1 12673 90 + 1
CUAGUGCUAUUUUCGUUACAAUA-----AAACAGAAGAUAGUGCUGCCCCAAAAAAAAAAAA--AUAAAAGAUAUAAACGCAAAACUAUUGGAUAUG
.(((..(((((((((((......-----.))).))))))))..)))..((((..........--........................))))..... ( -14.28)
>DroEre_CAF1 13458 74 + 1
CUAGUGCUAUUUUUGUUACAAUA-----C-AAAGCAGAUAGUGCUGCCCCGGAAAAUAU-----------------AAAGCAAAACUAUUGGAUAUG
.(((..((((((((((......)-----)-)))...)))))..))).............-----------------..................... ( -11.20)
>DroYak_CAF1 13878 92 + 1
CUAGUGCUAUUUUUGUUACAAUA-----CGAAAGAAGAUAGUGCUGACCCGGAAUAUAUGUAUAUAUAUAUACAUAAAAGCUAAACUAUUGGAUAUG
.(((..((((((((.((......-----..)).))))))))..)))..((((....((((((((....))))))))..((.....)).))))..... ( -17.60)
>consensus
CUAGUGCUAUUUUUGUUACAAUA_____CAACAGAAGAUAGUGCUGCCCCAAAAAAAAA_AA__AAAAAAGAUAUAAACGCAAAACUAUUGGAUAUG
.(((..((((((((...................))))))))..)))................................................... (-10.87 = -10.67 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:28 2006