| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 315,043 – 315,146 |
| Length | 103 |
| Max. P | 0.515282 |
| Location | 315,043 – 315,146 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 88.31 |
| Mean single sequence MFE | -23.07 |
| Consensus MFE | -21.47 |
| Energy contribution | -21.47 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.93 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.515282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 315043 103 + 22407834 CUCUUCUGGCCUUCGUAUCGUCUUCGCCCGAAGAGAUGAAGCCUGGCCAAGUUUUAUGUACCACAAAUGAAAUUAUAGUCGGCUCACACAUACAC--------ACAUACAC ((((((.(((...((...)).....))).)))))).(((.(((.(((..((((((((.........))))))))...))))))))).........--------........ ( -23.00) >DroSec_CAF1 19259 111 + 1 CUCUUCUGGCCUUCGUAUCGUCUUCGCCCGAAGAGAUGAAGCCUGGCCAAGUUUUAUGUACCACAAAUGAAAUUAUAGUCGGCUCACACAUACAAGCAUACACGCAUACAU ((((((.(((...((...)).....))).)))))).(((.(((.(((..((((((((.........))))))))...))))))))).........((......))...... ( -24.40) >DroEre_CAF1 20580 95 + 1 CUCUUCUGGCCUUCGUAUCGUCUUCGCCCGAAGAGAUGAAGCCUGGCCAAGUUUUAUGUACCACAAAUGAAAUUAUAGUCGGCACACACAUAC----------------AC ((((((.(((...((...)).....))).)))))).....(((.(((..((((((((.........))))))))...))))))..........----------------.. ( -21.80) >consensus CUCUUCUGGCCUUCGUAUCGUCUUCGCCCGAAGAGAUGAAGCCUGGCCAAGUUUUAUGUACCACAAAUGAAAUUAUAGUCGGCUCACACAUACA__________CAUACAC ((((((.(((...((...)).....))).)))))).....(((.(((..((((((((.........))))))))...))))))............................ (-21.47 = -21.47 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:41 2006