Locus 987

Sequence ID 2L_DroMel_CAF1
Location 2,847,698 – 2,847,789
Length 91
Max. P 0.948752
window1583

overview

Window 3

Location 2,847,698 – 2,847,789
Length 91
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.62
Mean single sequence MFE -28.74
Consensus MFE -17.00
Energy contribution -17.83
Covariance contribution 0.84
Combinations/Pair 1.21
Mean z-score -2.12
Structure conservation index 0.59
SVM decision value 1.38
SVM RNA-class probability 0.948752
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2847698 91 + 22407834
-----------------------------CGUCGCCAUCAACAGCUCGUCCAGUACUUUUCCUGCUCCUGGGCAUCGGAAUUGGCUAUCUGAUCACCAAGGUUCUUGUAUGGCCAAUUAU
-----------------------------....((((((((.((((.((((((..............))))))((((((........))))))......)))).))).)))))....... ( -23.04)
>DroSec_CAF1 838 91 + 1
-----------------------------CGUCGCCAUCAUCCACUCGCCCAGUGCUCUUCCUGCUCCUGGGCAUUGGAAUUGGCUAUCUGAUCACCCAGGUUCUUGUGUGGCCAAUAAU
-----------------------------....((((...((((...((((((.((.......))..))))))..))))..))))....((..(((.(((....))).)))..))..... ( -30.20)
>DroSim_CAF1 59 91 + 1
-----------------------------CGUCGCCAUCAUCCACUCGCCCAGUGCUCUUCCUGCUCCUGGGCAUUGGAAUUGGCUAUCUGAUCACCCAGGUUCUUGUGUGGCCAAUAAU
-----------------------------....((((...((((...((((((.((.......))..))))))..))))..))))....((..(((.(((....))).)))..))..... ( -30.20)
>DroEre_CAF1 743 91 + 1
-----------------------------CGUCGCCUUCAUCAUCUCGCCCAGUGCUUUUCCUGCUCCUGGGCAUCGGGAUUGGCUAUCUUAUCACCCAGGUUCUUCUGCGGCCUAUAAU
-----------------------------.(((((.......((((.((((((.((.......))..))))))...(((..(((........))))))))))......)))))....... ( -24.62)
>DroYak_CAF1 59 91 + 1
-----------------------------CGACGCCAUCAACCGCUCGUCCAGUGCUUUUCCUGCUCCUGGGCAUUGGGAUUGGCUAUCUAAUCACCCAGGUGCUUGUGUGGCCCAUAAU
-----------------------------....((((((((.((((.((((((.((.......))..))))))...((((((((....)))))).))..)))).))).)))))....... ( -29.50)
>DroAna_CAF1 3918 120 + 1
GCGAAACAGUCAUCUCCAUCCUCAGCACUUAUCGGGGUCAUCGUCCCGUCCUGUGCUGUUCCUGCUCAUGGGCAUUGGAAUUGGUUACAUAAUCACCCAGGUUGUUCUAUUGCCCAUCAU
((((.....))...........((((((....(((((......)))))....)))))).....))..(((((((.(((((((((............)))....)))))).)))))))... ( -34.90)
>consensus
_____________________________CGUCGCCAUCAUCCACUCGCCCAGUGCUUUUCCUGCUCCUGGGCAUUGGAAUUGGCUAUCUGAUCACCCAGGUUCUUGUGUGGCCAAUAAU
...............................................((((((.((.......))..)))))).........((((((.(((..((....))..))).))))))...... (-17.00 = -17.83 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:22 2006