Locus 984

Sequence ID 2L_DroMel_CAF1
Location 2,825,305 – 2,825,425
Length 120
Max. P 0.500000
window1580

overview

Window 0

Location 2,825,305 – 2,825,425
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.42
Mean single sequence MFE -29.88
Consensus MFE -26.76
Energy contribution -26.56
Covariance contribution -0.20
Combinations/Pair 1.06
Mean z-score -1.11
Structure conservation index 0.90
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2825305 120 - 22407834
UUUCUGAUCGGAAUAAAACGAUUAGUAUACGCGAAGUGCCCCAGAUCUACAUCAAUGAGGAAGAUGAACUCUUUGUCAACACCACGGGAUGUCGAAUAAGUGCGACGAAACCACUUUCGC
...(((((((........))))))).....((((((((.(((.(((....)))..(((.(((((.....))))).))).......))).(((((........)))))....))).))))) ( -32.80)
>DroSec_CAF1 8992 120 - 1
UUUCUGAUCGGAAUAAAACGAUUGAUAUAAGCGAAGUGCCCCAGAUCUACAUCAAUGAGGAAGAUGAACUCUUUGUCAACACCACGGGAUGUCGAAUAAGUGCGACGAAGCCACUUUCGC
.....(((((........))))).......((((((((.(((.(((....)))..(((.(((((.....))))).))).......))).(((((........)))))....))).))))) ( -29.30)
>DroSim_CAF1 11191 120 - 1
UUUCUGAUCGGAAUAAAACGAUUGACAUAAGCGAAGUGCCCCAGAUCUACAUCAAUGAGGAAGAUGAACUCUUUGUCAACACCACGGGAUGUCGAAUAAGUGCGACGAAACCACUUUCGC
.....(((((........))))).......((((((((.(((.(((....)))..(((.(((((.....))))).))).......))).(((((........)))))....))).))))) ( -29.30)
>DroEre_CAF1 8870 120 - 1
UUUCCGAUCGGAAUAAAGCCAUAAGCAUAAGCGAAGUGCCCCAGAUCUACAUCAAUGAGGAAGAUGAGCUCUUUGUCAACACCACGGGAUGUCGAAUAAGUUCGACGAAACCACUUUCGC
.((((....))))....((.....))....((((((((.(((.(((....)))..(((.(((((.....))))).))).......))).(((((((....)))))))....))).))))) ( -31.50)
>DroYak_CAF1 8920 120 - 1
UUUCCGCUCGGAAAAAAGCCAUUAGUAUAAGCGAAGUGCCCCAGAUCUACAUCAAUGAGGAAGAUGAUCUCUUUGUCAACACCACGGGAUGUCGAAUAAGUUCAACAAAGCCACUUUCGC
(((((....)))))................((((((((.(((.(((....)))..(((.(((((.....))))).))).......))).(((.(((....))).)))....))).))))) ( -26.50)
>consensus
UUUCUGAUCGGAAUAAAACGAUUAGUAUAAGCGAAGUGCCCCAGAUCUACAUCAAUGAGGAAGAUGAACUCUUUGUCAACACCACGGGAUGUCGAAUAAGUGCGACGAAACCACUUUCGC
.((((....)))).................((((((((.(((.(((....)))..(((.(((((.....))))).))).......))).(((((........)))))....))).))))) (-26.76 = -26.56 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:19 2006