Locus 982

Sequence ID 2L_DroMel_CAF1
Location 2,824,945 – 2,825,065
Length 120
Max. P 0.639545
window1578

overview

Window 8

Location 2,824,945 – 2,825,065
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.92
Mean single sequence MFE -37.08
Consensus MFE -30.09
Energy contribution -29.97
Covariance contribution -0.12
Combinations/Pair 1.13
Mean z-score -1.44
Structure conservation index 0.81
SVM decision value 0.22
SVM RNA-class probability 0.639545
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2824945 120 - 22407834
UGGGUACUGGUCUGCAACAUAUUCGCACUUGGUGCUGGGUAGACUUUGGCAGGAUCAUAUUCCACGACGUUAUGUACUUCCUGCCACCACUGCCUCAGGCUACGAACAGAUCAACAGAAC
.......(((((((.......((((....((((.((((((((....((((((((.((((...........))))....))))))))...))))).))))))))))))))))))....... ( -36.11)
>DroSec_CAF1 8632 120 - 1
UGGGUACUGGUCUGCAACACAUUCGUACUUGGUGCUGGGUGGACUUUGGCAGGAUCAUAUUCCACGACGUUCUGUACUUCCUGCCACCACUGCCCCAGGCUACGAACAGAUCAACAGAAC
.......(((((((.......(((((((((((.((..(((((....((((((((...(((.............)))..))))))))))))))).))))).)))))))))))))....... ( -40.23)
>DroSim_CAF1 10831 120 - 1
UAGGUACUGGUCUGCAACACAUUCGUACUUGGUGCUGGGUGGACUUUGGCAGGAUCAUAUUCCACGACGUUCUGUACUUCCUGCCACCACUGCCCCAGGCUACGAACAGAUCAACAGAAC
.......(((((((.......(((((((((((.((..(((((....((((((((...(((.............)))..))))))))))))))).))))).)))))))))))))....... ( -40.23)
>DroEre_CAF1 8510 120 - 1
UGGGCACUGGCUUGCAAAACAUUCGAACUUGGUGCUGGGUGGACUUUGGCAGGAUCAUUUUCCACGACGUUCUCUAUUUCCUGCCACCACCGCCCCAGGCUACAAACAGAUCUACAGAAC
..(((.(((....(((...((........)).))).((((((....((((((((........................))))))))...))))))))))))................... ( -33.46)
>DroYak_CAF1 8560 120 - 1
UUGGCACUGGUCUGCAAUACAUUCGCACUUGGUGCUGGGUGGACUUUGGCAGGAUUAUUUUCCACGACGUUCUCUUUUUCCUGCCACCGCCGCCACCGACUACGAACAGAUCUACAGAAC
........((((((.......((((...((((((...(((((....((((((((........................)))))))))))))..))))))...))))))))))........ ( -35.37)
>consensus
UGGGUACUGGUCUGCAACACAUUCGCACUUGGUGCUGGGUGGACUUUGGCAGGAUCAUAUUCCACGACGUUCUGUACUUCCUGCCACCACUGCCCCAGGCUACGAACAGAUCAACAGAAC
........((((((.......((((....((((.((((((((....((((((((........................))))))))...))))).)))))))))))))))))........ (-30.09 = -29.97 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:17 2006