Locus 981

Sequence ID 2L_DroMel_CAF1
Location 2,824,545 – 2,824,665
Length 120
Max. P 0.966305
window1577

overview

Window 7

Location 2,824,545 – 2,824,665
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.08
Mean single sequence MFE -39.75
Consensus MFE -31.64
Energy contribution -33.48
Covariance contribution 1.84
Combinations/Pair 1.12
Mean z-score -2.25
Structure conservation index 0.80
SVM decision value 1.59
SVM RNA-class probability 0.966305
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2824545 120 + 22407834
AGCGAAUGAGAUUCAAUCUCAGUCAUCAGAGGUCGCAUGUAAAUAUCGGUGGGCUGCUUCUGAAAGCCCCUCUUUCUGUAGAUAAACAGCCCAGCGGUAUCCGUGUCCUCUGCAAAGAUG
.((((.((((((...)))))).))...(((((..(((((...((((((.(((((((..((((((((.....)))))...)))....))))))).)))))).))))))))))))....... ( -44.10)
>DroSec_CAF1 8232 120 + 1
AACGAAUGAGAUUCGAUUUCAGUCAUCAGAGGUCGCAUGUAAAUAUCGGUGGGCUGCUUCUGGAAUCCUCUCUUUCUGUAAAUAAACAGCCCGGCGGUAUCCGUGUCCUCUGCAAAGAUG
...((.((((((...)))))).))..((((((..(((((...((((((.(((((((.....((((........)))).........))))))).)))))).)))))))))))........ ( -36.84)
>DroSim_CAF1 10431 120 + 1
AUCGAAUGAGAUUCGAUUUCAGUCAUCAGAGGUCGCAUGUAAAUAUCGGUGGGCUGCUUCUGGAAGCCCCUCUUUCUGUAGAUAAACAGCCCGGCGGUAUCCGUGUCCUCUGCAAAGAUG
(((((.((((((...)))))).))..((((((..(((((...((((((.(((((((..((((((((......)))))..)))....))))))).)))))).)))))))))))....))). ( -41.00)
>DroEre_CAF1 8110 120 + 1
AACGAAUGAGAUUCGAUCUCAACCAUCAGAGGACGCAUGUAAAUAUCGGUGGGCUGCUUCUUGUAGCCCCUCUUUCUGUAGAUAAAAAGCCCUGCGGUAUCCGUGUCCUCUGCAAAGAUG
......((((((...)))))).....((((((((((...........((.(((((((.....))))))).))...((((((..........)))))).....))))))))))........ ( -41.60)
>DroYak_CAF1 8160 120 + 1
AACGAAUGAGCUUCGAUCUCAGUCAUCAGCGGACGCAUGUAAAUAUCGGUGGGCUCCUUCUUGUAGCCCCUUUUUCUGUAGGUAAACAGCCCUGCGGUAUCCGUGUCCUCUGCAAAAAUG
...((.((((.......)))).))..(((.((((((...........((.(((((.(.....).)))))))....(((((((........))))))).....)))))).)))........ ( -35.20)
>consensus
AACGAAUGAGAUUCGAUCUCAGUCAUCAGAGGUCGCAUGUAAAUAUCGGUGGGCUGCUUCUGGAAGCCCCUCUUUCUGUAGAUAAACAGCCCGGCGGUAUCCGUGUCCUCUGCAAAGAUG
...((.((((((...)))))).))..((((((..(((((...((((((.(((((((..((((((((.....)))))...)))....))))))).)))))).)))))))))))........ (-31.64 = -33.48 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:16 2006