Locus 98

Sequence ID 2L_DroMel_CAF1
Location 314,406 – 314,509
Length 103
Max. P 0.719933
window144

overview

Window 4

Location 314,406 – 314,509
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 88.74
Mean single sequence MFE -22.12
Consensus MFE -16.84
Energy contribution -17.00
Covariance contribution 0.16
Combinations/Pair 1.20
Mean z-score -1.74
Structure conservation index 0.76
SVM decision value 0.40
SVM RNA-class probability 0.719933
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 314406 103 + 22407834
CAAAGAAAUUUUUCUUUUGGCGCCAAGCAAUUUGGGGGGAAAUCAAUUCCGCAACGCUCCAAAAAUCAAAUCCAUUUUUUCGUGGAGAAUUAUUUCCUUUUAC
....(((((..(((((((((.((((((...)))).(.((((.....)))).)...)).))))))......(((((......))))))))..)))))....... ( -22.20)
>DroSec_CAF1 18643 103 + 1
CAAAGAAAUUUUUCUUUUAGCGCCAAGCAAUGUGGAAGGAAAUCAAUUCCGCAACGCUCCAAAAUUCAAGUCCAUUUAUUCGUGGAGAAUUAUUUCCUUCUUC
.((((((....))))))..((.....)).....((((((((((.(((((.((...)).............(((((......)))))))))))))))))))).. ( -22.40)
>DroSim_CAF1 20448 103 + 1
CAAAGAAAUUUUUCUUUUAGCGCCAAGCAAUGUGGAAGGAAAUCAAUUCCGCAACGCUCCAAAAUUCAAGUCCAUUUAUUCGUGGAGAAUUAUUUCCUUAUUC
....(((((..(((...........(((..(((((((.........)))))))..)))............(((((......))))))))..)))))....... ( -20.30)
>DroEre_CAF1 19934 103 + 1
CAUAGAAAUGUUUCCUUGGGCGCCAUGCAAUUUGGAAGGAAAGUAAUUCCGCAACGCUCCAAAAAUCAAAUCCAUUUAUUCAUGGAGAAUUAUUUCCUUUCAA
....((((((.(((.((((((((((.......)))..((((.....))))....))).))))........(((((......)))))))).))))))....... ( -22.90)
>DroYak_CAF1 20390 102 + 1
CAAGGAAAUGUUUCUUUUGGCGCCAAGCAAUUUGGGAGGAAAUCAAUUCGGCAACGCUCCAAAAAUCAAAU-CAUUUAUUCACGGAGAAUUAUUUCCUUUUCU
.(((((((((.((((((((((.....))......(((((((.....)))(....).))))...........-........)).)))))).))))))))).... ( -22.80)
>consensus
CAAAGAAAUUUUUCUUUUGGCGCCAAGCAAUUUGGAAGGAAAUCAAUUCCGCAACGCUCCAAAAAUCAAAUCCAUUUAUUCGUGGAGAAUUAUUUCCUUUUAC
.((((((....))))))..((.....)).....((((((((((.(((((.((...)).............(((((......)))))))))))))))))))).. (-16.84 = -17.00 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:40 2006