Locus 977

Sequence ID 2L_DroMel_CAF1
Location 2,804,593 – 2,804,713
Length 120
Max. P 0.808238
window1569

overview

Window 9

Location 2,804,593 – 2,804,713
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.61
Mean single sequence MFE -32.44
Consensus MFE -28.14
Energy contribution -28.50
Covariance contribution 0.36
Combinations/Pair 1.03
Mean z-score -1.40
Structure conservation index 0.87
SVM decision value 0.64
SVM RNA-class probability 0.808238
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2804593 120 - 22407834
GCAGUCCAGUCCAGCGGAUUGCCUUUGACUUUCCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGCCAAAGCGAUACCAUCGCUUUCUUUUGAUGGCCCAAUGUCUAUUAA
(((((((........)))))))....(((......(((.((((((..(((((....))))))))))).)))..(((((((((((...)))))))((....)))))).....)))...... ( -37.20)
>DroSec_CAF1 27457 114 - 1
GCAGUCCAGUCCGGCGGAUUGCCU------UUCCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGCCAACGCGAUACCAUUGCUUUCUUUUGAUGGCCCAAAGUCUAUUAA
(((((((........)))))))((------((...(((.((((((..(((((....))))))))))).)))..((((..(((((...)))))..((....))))))..))))........ ( -31.40)
>DroSim_CAF1 29286 114 - 1
GCAGUCCAGUCCAGCGGAUUGCCU------UUCCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGUUUCUCACAGCCAACGCGAUACCAUUGCUUUCUUUUGAUGGCCCAAAGUCUAUUAA
(((((((........)))))))..------.....((((((.((((((((((....))))).)))).......((((..(((((...)))))..((....)))))).....).)))))). ( -30.00)
>DroEre_CAF1 28079 114 - 1
GCAGUCCAGUCCAGCGGAUUGCCU------UUGCCAGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGCCAACGCGAUACCAUCGCUUUCUUCUGAUGUCCCAAAGUCUAUAAA
(((((((........)))))))((------(((...((.((((((..(((((....))))))))))).)).(((.....(((((...)))))......)))......)))))........ ( -32.40)
>DroYak_CAF1 27322 114 - 1
GCAGUCGAGUCCAGCGGAUUGCCU------UCGCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGCCAACGCGAUACCAUCGCUUUCUUCCGAUGGCCCAAAGUCUAAUAA
((.((((.(((..(((((.....)------))))..)))...)))).(((((....)))))((((((.....)))))).))....((((((........))))))............... ( -31.20)
>consensus
GCAGUCCAGUCCAGCGGAUUGCCU______UUCCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGCCAACGCGAUACCAUCGCUUUCUUUUGAUGGCCCAAAGUCUAUUAA
(((((((........)))))))..............((.((((((..(((((....))))))))))).))...((((..(((((...)))))..((....)))))).............. (-28.14 = -28.50 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:08 2006