Locus 976

Sequence ID 2L_DroMel_CAF1
Location 2,803,989 – 2,804,098
Length 109
Max. P 0.544787
window1568

overview

Window 8

Location 2,803,989 – 2,804,098
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.09
Mean single sequence MFE -27.74
Consensus MFE -21.62
Energy contribution -22.42
Covariance contribution 0.80
Combinations/Pair 1.06
Mean z-score -1.46
Structure conservation index 0.78
SVM decision value 0.02
SVM RNA-class probability 0.544787
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2803989 109 + 22407834
-AAAUUAGAC--GU-U-UCGAGUGAGAUUUUGCCUCGAUCCUGAGUAUACAAA------UCACGAAAGGUAUAUUGUGCGAUUCCAUCGCAUUAUAUUUGAGGUGAAUGCUUUAUUGUGA
-.........--(.-.-(((((.(........))))))..).((((((.((..------((((....)..((((.(((((((...))))))).)))).)))..)).))))))........ ( -24.40)
>DroSec_CAF1 26840 109 + 1
-AAAUUAGAC--GU-U-UAAAGUGAGAUUUUGCCUCGAUCCUGAGUAUACAAA------UUACGAAAGGUAUAUUGUGCGAUUCCAUCGCAUUAUAUUUGAGGUGAAUGCUUUAUUGUAA
-.......((--(.-.-((((((.....((..((((((.(((..(((......------.)))...))).((((.(((((((...))))))).))))))))))..)).)))))).))).. ( -27.70)
>DroSim_CAF1 28669 109 + 1
-AAAUUAGAC--GU-U-UGAAGUGAGAUUUUGCCUCGAUCCUGAGUAUACAAA------UUACGAAAGGUAUAUUGUGCGAUUCCAUCGCAUUAUAUUUGAGGUGAAUGCUUUAUUGUGA
-.......((--(.-.-((((((.....((..((((((.(((..(((......------.)))...))).((((.(((((((...))))))).))))))))))..)).)))))).))).. ( -27.80)
>DroEre_CAF1 27386 119 + 1
-AAAUUAUACUCGUAAGUUGGGAGAGAUUUUGCCUCGAUCCUGAGUAUACGAGUAGAAAUUGCGAAAGGUAUAUUGUGCGAUUCCAUCGCAUUAUAUUUGAGGUGAAUGCUUUGUUGUGA
-......(((((((((.(..(((..((.......))..)))..).).))))))))....(..(((.(((((((..(((((((...))))))))))))))(((((....))))).)))..) ( -32.00)
>DroYak_CAF1 26708 111 + 1
AAAAUUAGAC--GU-CGUUGGGAGCGAUCUUGCCUCGAUCCUGAGUAUACGAG------UUACGAAAGGUAUAUUGUGCGAUUCCAUCGCAGUAUAUUUGAGGUGAAUGCUUUAUUGUGA
.........(--(.-((...((((((.((..(((((((.(((..(((......------.)))...)))(((((..((((((...))))))))))).))))))))).))))))..)))). ( -26.80)
>consensus
_AAAUUAGAC__GU_U_UUGAGUGAGAUUUUGCCUCGAUCCUGAGUAUACAAA______UUACGAAAGGUAUAUUGUGCGAUUCCAUCGCAUUAUAUUUGAGGUGAAUGCUUUAUUGUGA
....................((((((..((..((((((.(((..(((.............)))...))).((((.(((((((...))))))).))))))))))..))...)))))).... (-21.62 = -22.42 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:07 2006