Locus 974

Sequence ID 2L_DroMel_CAF1
Location 2,802,523 – 2,802,623
Length 100
Max. P 0.707510
window1565

overview

Window 5

Location 2,802,523 – 2,802,623
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 87.87
Mean single sequence MFE -24.40
Consensus MFE -22.74
Energy contribution -22.55
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -1.42
Structure conservation index 0.93
SVM decision value 0.37
SVM RNA-class probability 0.707510
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2802523 100 + 22407834
UUGGCACUCGGACGCCUUGGCUAAUUGCUUUGGGUGCAGCCCAGAUGAUUGAGUGAAUUGAGUGAGACGAUUCGAUAAAAUAAGAUUCGAAUUUGGUUCA
.....((((((.(((....)).......((((((.....)))))).).))))))((((..(((....(((.((..........)).))).)))..)))). ( -24.80)
>DroSec_CAF1 25520 85 + 1
---------------CUUGGCUAAUUGCUCUGGGUGCAGCCCAGAUGAUUGAGUGAAUUGAGUGAGACGAUUCGAUAAAAUAAGAUUCGAAUUUGGUUCA
---------------....((((((((.((((((.....))))))))))).)))((((..(((....(((.((..........)).))).)))..)))). ( -23.20)
>DroSim_CAF1 26899 85 + 1
---------------CUUGGCUAAUUGCUCUGGGUGCAGCCCAGAUGAUUGAGUGAAUUGAGUGAGACGAUUCGAUAAAAUAAGAUUCGAAUUUGGUUCA
---------------....((((((((.((((((.....))))))))))).)))((((..(((....(((.((..........)).))).)))..)))). ( -23.20)
>DroEre_CAF1 25932 93 + 1
UUGGCACUUCG-------GGCUAAUUGCUCUGGGUGCAGCCCAGAUGAUUGAGUGAAUUGAGUGAGACGAUUCGAUAAAAUAAGAUUCGAAUUUGGUUCA
(((((.(....-------))))))....((((((.....))))))........(((((..(((....(((.((..........)).))).)))..))))) ( -26.40)
>consensus
_______________CUUGGCUAAUUGCUCUGGGUGCAGCCCAGAUGAUUGAGUGAAUUGAGUGAGACGAUUCGAUAAAAUAAGAUUCGAAUUUGGUUCA
...................((((((((.((((((.....))))))))))).)))((((..(((....(((.((..........)).))).)))..)))). (-22.74 = -22.55 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:04 2006