Locus 972

Sequence ID	2L_DroMel_CAF1
Location	2,801,397 – 2,801,517
Length	120
Max. P	0.985592

overview

Window 0

Location	2,801,397 – 2,801,517
Length	120
Sequences	5
Columns	120
Reading direction	forward
Mean pairwise identity	91.76
Mean single sequence MFE	-39.30
Consensus MFE	-30.18
Energy contribution	-31.66
Covariance contribution	1.48
Combinations/Pair	1.07
Mean z-score	-3.03
Structure conservation index	0.77
SVM decision value	2.01
SVM RNA-class probability	0.985592
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2801397 120 + 22407834
CGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGAGACUAAUCGAUUUGAAUUGGGGCAAUUGGCAUGAUUGCUUUGGUUUGGUUUGGGGCAACUUUGAUGAGGUAAUGCGAAGUU
......(((.((((.((((..((((((((..(((.....)))...((((.(..(((..((((((((.....))))))))..)))..).))))))))))))..)))).)))))))...... ( -42.80)
>DroSec_CAF1 24379 119 + 1
CGUGGGGCAAUUGCAUUAUUGGGGUUGCUGCGUCAUCGAGACCAAUCGAUUUGAAUUGGGGCAAUUGGCAUGAUUGCUGUGGUUUGGUUUGGGGCAACU-UGAUGAGGUAAUGCGAAUUU
(((..(((((((.((....)).)))))))((.((((((((.....((((.(..(((((.(((((((.....))))))).)))))..).)))).....))-)))))).))...)))..... ( -40.30)
>DroSim_CAF1 25767 119 + 1
CGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGAGACCAAUCGAUUUGAAUUGGGGCAAUUGGCAUGAUUGCUGUGGUUUGGUUUGGGGCAACU-UGAUGAGGUAAUGCGAAGUU
(((..(((((((.((....)).))))))).(.((((((((.....((((.(..(((((.(((((((.....))))))).)))))..).)))).....))-)))))).)....)))..... ( -37.10)
>DroEre_CAF1 24801 114 + 1
CGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGAGACCAAUCGAUCUGAAUUGGGGCAAUUGGGAUGAUUGG-----UUCGGCUUGUGGCAACU-UGAUGAGGUAAUGCAAAGUU
..........((((((((((.(((((((..((...(((((.((((((.((((.(((((...))))).))))))))))-----)))))..))..))))))-).....)))))))))).... ( -40.00)
>DroYak_CAF1 24020 114 + 1
CGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGACAGCAAUCGAUUUGAAUUGGGGCAAUUGUGAUGAUUGC-----UUCGCUUUGGGGCAACU-UGAUGAGGUAAUGCAAAGUU
..........((((((((((..(((((((((.......)))))))))..........(((((((((.....))))))-----)))...(..((....))-..)...)))))))))).... ( -36.30)
>consensus
CGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGAGACCAAUCGAUUUGAAUUGGGGCAAUUGGCAUGAUUGCU_UGGUUUGGUUUGGGGCAACU_UGAUGAGGUAAUGCGAAGUU
......(((.((((.((((((.(((((((.(...(((((......)))))((((((((.(((((((.....))))))).))))))))...).))))))).)))))).)))))))...... (-30.18 = -31.66 +   1.48)

alignment

secondary structure

dotplot

Window 1

Location	2,801,397 – 2,801,517
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	91.76
Mean single sequence MFE	-19.85
Consensus MFE	-14.90
Energy contribution	-15.10
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-2.17
Structure conservation index	0.75
SVM decision value	0.74
SVM RNA-class probability	0.838201
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2801397 120 - 22407834
AACUUCGCAUUACCUCAUCAAAGUUGCCCCAAACCAAACCAAAGCAAUCAUGCCAAUUGCCCCAAUUCAAAUCGAUUAGUCUCGAUGACACAGCAACCCCAAUAAUGCAAUUGCCCCACG
......((((((..........(((((................(((((.......)))))..........(((((......)))))......))))).....))))))............ ( -16.16)
>DroSec_CAF1 24379 119 - 1
AAAUUCGCAUUACCUCAUCA-AGUUGCCCCAAACCAAACCACAGCAAUCAUGCCAAUUGCCCCAAUUCAAAUCGAUUGGUCUCGAUGACGCAGCAACCCCAAUAAUGCAAUUGCCCCACG
......((((((........-.(((((................(((((.......))))).((((((......))))))..........)))))........))))))............ ( -18.73)
>DroSim_CAF1 25767 119 - 1
AACUUCGCAUUACCUCAUCA-AGUUGCCCCAAACCAAACCACAGCAAUCAUGCCAAUUGCCCCAAUUCAAAUCGAUUGGUCUCGAUGACACAGCAACCCCAAUAAUGCAAUUGCCCCACG
......((((((........-.(((((................(((((.......))))).((((((......)))))).............))))).....))))))............ ( -17.34)
>DroEre_CAF1 24801 114 - 1
AACUUUGCAUUACCUCAUCA-AGUUGCCACAAGCCGAA-----CCAAUCAUCCCAAUUGCCCCAAUUCAGAUCGAUUGGUCUCGAUGACACAGCAACCCCAAUAAUGCAAUUGCCCCACG
....((((((((........-.(((((.......((((-----(((((((((..(((((...)))))..))).))))))).)))........))))).....)))))))).......... ( -24.80)
>DroYak_CAF1 24020 114 - 1
AACUUUGCAUUACCUCAUCA-AGUUGCCCCAAAGCGAA-----GCAAUCAUCACAAUUGCCCCAAUUCAAAUCGAUUGCUGUCGAUGACACAGCAACCCCAAUAAUGCAAUUGCCCCACG
....((((((((........-.(((((.......((((-----((((((.....(((((...)))))......))))))).)))........))))).....)))))))).......... ( -22.20)
>consensus
AACUUCGCAUUACCUCAUCA_AGUUGCCCCAAACCAAACCA_AGCAAUCAUGCCAAUUGCCCCAAUUCAAAUCGAUUGGUCUCGAUGACACAGCAACCCCAAUAAUGCAAUUGCCCCACG
......((((((..........(((((................(((((.......)))))..........(((((......)))))......))))).....))))))............ (-14.90 = -15.10 +   0.20)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:00 2006