| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,797,925 – 2,798,028 |
| Length | 103 |
| Max. P | 0.963992 |
| Location | 2,797,925 – 2,798,028 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 77.00 |
| Mean single sequence MFE | -34.50 |
| Consensus MFE | -18.26 |
| Energy contribution | -21.70 |
| Covariance contribution | 3.44 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.53 |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.963992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2797925 103 + 22407834 ------CUGCCGUUCGGGCCAACUUGAUUAUU-------GGCAAUUAUGUGCGGCCUGCCGAGCUUGUUUGCAGCAUUUUUAUUGCUAUGCUUCGGCAAUGCCCUUAAUAGCCUGC-- ------..((..((.((((............(-------((((((...((((((....))..((......)).))))....)))))))(((....)))..))))..))..))....-- ( -30.50) >DroPse_CAF1 22864 97 + 1 GAGGGGGGGCUG-GGGGCCCAACUUGAUUAUU-------GGCUAUUAUGUGCGGUUUCC-AUACUUCGCAGGAGCCUUUUUACCCC----------CCAUGGCCUCCUCCAUCUAC-- (.((((((((((-((((..(.....)......-------((((....((((.(((....-..))).))))..)))).......)))----------))..))))))))))......-- ( -36.50) >DroSec_CAF1 20985 99 + 1 ------CGGCCGUUCGGGCCAACUUGAUUAUUUUGUUGUUGCAAUUAUGUGCGGACUCCCGAGCUUGUCUGCAGCAUUUUUAUUGCUAU-----------GCCCUUAAUAGCCUGC-- ------.(((..((.((((((((...........))))..(((((.((((((((((..........))))))).)))....)))))...-----------))))..))..)))...-- ( -30.40) >DroSim_CAF1 22362 103 + 1 ------CGGCCGUUCGGGCCAACUUGAUUAUU-------GGCAAUUAUGUGCGGACUCCCGAGCUUGUCUGCAGCAUUUUUAUUGCUAUGCUUCGGCAAUGCCCUUAAUAGCCUGC-- ------.(((..((.((((............(-------((((((.((((((((((..........))))))).)))....)))))))(((....)))..))))..))..)))...-- ( -36.40) >DroEre_CAF1 21237 103 + 1 ------CGGCUGUUCGGGCCAACUUGAUUAUU-------GGCAAUUAUGUGCGGAUUCCCGAGCUUGUCUGCAGCAUUUUUAUUGCUAUGCUUCGGCAAUGCCCUUAAUAGCCUGC-- ------.(((((((.((((............(-------((((((.((((((((((..........))))))).)))....)))))))(((....)))..))))..)))))))...-- ( -38.40) >DroYak_CAF1 20447 105 + 1 ------CGGCCGUACGGGCCAACUUGAUUAUU-------GGCAAUUAUGUGCGGAUUGCCGAGCUUGUCUGCAGCAUUUUUAUUGCCAUGCUUCGGCAUUGCUCUUAAUAGCCUGCUC ------.(((..((.((((............(-------((((((.((((((((((.((...))..))))))).)))....)))))))(((....)))..)))).))...)))..... ( -34.80) >consensus ______CGGCCGUUCGGGCCAACUUGAUUAUU_______GGCAAUUAUGUGCGGACUCCCGAGCUUGUCUGCAGCAUUUUUAUUGCUAUGCUUCGGCAAUGCCCUUAAUAGCCUGC__ .......(((.(((.((((....................((((((.((((((((((..........))))))).)))....)))))).(((....)))..))))..))).)))..... (-18.26 = -21.70 + 3.44)
| Location | 2,797,925 – 2,798,028 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 77.00 |
| Mean single sequence MFE | -29.60 |
| Consensus MFE | -15.88 |
| Energy contribution | -16.73 |
| Covariance contribution | 0.85 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2797925 103 - 22407834 --GCAGGCUAUUAAGGGCAUUGCCGAAGCAUAGCAAUAAAAAUGCUGCAAACAAGCUCGGCAGGCCGCACAUAAUUGCC-------AAUAAUCAAGUUGGCCCGAACGGCAG------ --....(((......(((.((((((((((((..........)))))((......))))))))))))..........(((-------(((......))))))......)))..------ ( -30.70) >DroPse_CAF1 22864 97 - 1 --GUAGAUGGAGGAGGCCAUGG----------GGGGUAAAAAGGCUCCUGCGAAGUAU-GGAAACCGCACAUAAUAGCC-------AAUAAUCAAGUUGGGCCCC-CAGCCCCCCCUC --....((((......))))((----------((((......((((..((((......-(....)))))......))))-------.........(((((....)-)))))))))).. ( -32.10) >DroSec_CAF1 20985 99 - 1 --GCAGGCUAUUAAGGGC-----------AUAGCAAUAAAAAUGCUGCAGACAAGCUCGGGAGUCCGCACAUAAUUGCAACAACAAAAUAAUCAAGUUGGCCCGAACGGCCG------ --...((((.....((((-----------...(((((....(((.(((.(((..........))).)))))).)))))..((((...........))))))))....)))).------ ( -28.20) >DroSim_CAF1 22362 103 - 1 --GCAGGCUAUUAAGGGCAUUGCCGAAGCAUAGCAAUAAAAAUGCUGCAGACAAGCUCGGGAGUCCGCACAUAAUUGCC-------AAUAAUCAAGUUGGCCCGAACGGCCG------ --...((((.....((((..(.(((((((((..........)))))((......)))))).)))))..........(((-------(((......))))))......)))).------ ( -28.30) >DroEre_CAF1 21237 103 - 1 --GCAGGCUAUUAAGGGCAUUGCCGAAGCAUAGCAAUAAAAAUGCUGCAGACAAGCUCGGGAAUCCGCACAUAAUUGCC-------AAUAAUCAAGUUGGCCCGAACAGCCG------ --...((((.....(((((((.(((((((((..........)))))((......)))))).)))..(((......)))(-------(((......))))))))....)))).------ ( -28.10) >DroYak_CAF1 20447 105 - 1 GAGCAGGCUAUUAAGAGCAAUGCCGAAGCAUGGCAAUAAAAAUGCUGCAGACAAGCUCGGCAAUCCGCACAUAAUUGCC-------AAUAAUCAAGUUGGCCCGUACGGCCG------ .....(((.((((.(.((..(((((((((((..........)))))((......))))))))....)).).)))).)))-------............((((.....)))).------ ( -30.20) >consensus __GCAGGCUAUUAAGGGCAUUGCCGAAGCAUAGCAAUAAAAAUGCUGCAGACAAGCUCGGGAAUCCGCACAUAAUUGCC_______AAUAAUCAAGUUGGCCCGAACGGCCG______ .....((((.....((((..(((....)))..(((((......(((.......))).(((....)))......))))).....................))))....))))....... (-15.88 = -16.73 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:57 2006