| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,793,325 – 2,793,445 |
| Length | 120 |
| Max. P | 0.660002 |
| Location | 2,793,325 – 2,793,445 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.39 |
| Mean single sequence MFE | -29.87 |
| Consensus MFE | -25.21 |
| Energy contribution | -24.93 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2793325 120 - 22407834 UAUAAUCUUCUUCUGUGUGCGGAGAUUCCUGAAGAAGCGAAGAACCAAAGAUGGAAAGGGUAAGAAGGGUGUCGACAUGAAGUCGGUACAGUUGUUGGGAUCGGCGUACAAGGAGAAAGU .......(((((((.((((((..(((.((..(...(((......(((....)))..............((..((((.....))))..)).))).)..)))))..)))))))))))))... ( -36.10) >DroVir_CAF1 18972 120 - 1 UAUUAUAUUUUUCUGUGUGCGCAGAUUCCUCAAGAAGCGAAGAACCAAAGAUGGUAAGGGUAAGAAGGGUGUCGAUAUGAAAUCGGUACAAUUAUUGGGAUCGGCAUAUAAAGAGAAAGU .......(((((((((((((...((((((..............((((....))))...(((((.....((..((((.....))))..))..))))))))))).))))))..))))))).. ( -29.40) >DroGri_CAF1 17357 120 - 1 UAUCAUAUUUUUCUGUGUGCGCAGAUUCCUUAAGAAACGAAGAACCAAAGAUGGUAAGGGUAAGAAGGGUGUCGAUAUGAAAUCGGUACAGUUAUUGGGAUCGGCAUACAAAGAGAAAGU .......(((((((.((((.((.((((((..............((((....)))).............((..((((.....))))..)).......)))))).)).)))).))))))).. ( -30.20) >DroWil_CAF1 22417 120 - 1 UAUUAUCUUCUUUUGUGUUCGGCGAUUCUUGAAGAAACGAAGAACCAAAGAUGGUAAGGGUAAGAAGGGCGUCGAUAUGAAAUCGGUACAGUUAUUAGGAUCAGCGUAUAAAGAGAAAGU ..(((((.(((((.(.((((..((.(((.....))).))..)))))))))).))))).(((...((..((.(((((.....)))))....))..))...))).................. ( -21.10) >DroMoj_CAF1 19274 120 - 1 UAUCAUAUUUUUCUGUGUGCGCAGAUUCCUGAAGAAGCGAAGAACCAAAGAUGGUAAGGGUAAGAAGGGUGUCGAUAUGAAAUCGGUACAGUUGUUGGGAUCAGCCUACAAGGAGAAAGU .......(((((((.((((.((.(((.((..(...(((.....((((....)))).............((..((((.....))))..)).))).)..))))).)).)))).))))))).. ( -30.70) >DroPer_CAF1 17227 120 - 1 UAUUAUAUUCUUCUGUGUGCGGAGGUUCCUGAAGAAGCGAAGAACCAAAGAUGGUAAGGGUAAGAAGGGUGUCGAUAUGAAAUCGGUACAGUUGUUGGGAUCGGCCUACAAGGAGAAAGU .......((((((((((.((.((...(((..(...(((.....((((....)))).............((..((((.....))))..)).))).)..))))).)).))).)))))))... ( -31.70) >consensus UAUUAUAUUCUUCUGUGUGCGCAGAUUCCUGAAGAAGCGAAGAACCAAAGAUGGUAAGGGUAAGAAGGGUGUCGAUAUGAAAUCGGUACAGUUAUUGGGAUCGGCAUACAAAGAGAAAGU .......(((((((((((((...((((((..............((((....)))).............((..((((.....))))..)).......)))))).)))))).)))))))... (-25.21 = -24.93 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:51 2006