| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,789,915 – 2,790,018 |
| Length | 103 |
| Max. P | 0.812824 |
| Location | 2,789,915 – 2,790,018 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 87.25 |
| Mean single sequence MFE | -18.37 |
| Consensus MFE | -14.78 |
| Energy contribution | -14.74 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.812824 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2789915 103 + 22407834 UGGCUUAGAUGUUGACUUCUCGCAAGACCACCUAAAUAUUGGAAAAUAAAUAAUAAUGUCAGUGAAAUAAAAAGAAAAUAUAAUAUCUAAGCAAGUCCUGGUG--- ..((((((((((((.....((....)).(((....((((((............))))))..)))................))))))))))))...........--- ( -19.00) >DroSec_CAF1 13122 103 + 1 UGGCUUAGAUGUUGACUUCUUGCAAGACCACCUAAAUAUUGGAAAAUAAAUAAUAAUGUCAGUGAAAUAAAAAGAAAAUAAAAGAUCUAAGCAAUUCCUGGUA--- ..((((((((.((...(((((.......(((....((((((............))))))..))).......))))).....)).))))))))...........--- ( -16.74) >DroSim_CAF1 13223 99 + 1 UGGCUUAGAUGUUGACUUCUCGCAAGACCACCUAAAUAUUGGAAAAUAAAUAAUAAUGUCAGUGAAAUAAAAAGAAAAUAUAAUAUCUAAG----UCCUGGUA--- .(((((((((((((.....((....)).(((....((((((............))))))..)))................)))))))))))----))......--- ( -18.70) >DroEre_CAF1 13154 106 + 1 UGGCUUAGAUGUUGACUUCUCGCAAGGACAUCUAAAUAUUAGAAAAUAAGUAAUAAUAUCAGUGAAAUUAAAACAAAAUAUAAUAUCUUUGCAAAUCCCUGAGCUA ((((((((.....((....))(((((((..((((.....))))......((..((((.((...)).))))..))...........)))))))......)))))))) ( -17.90) >DroYak_CAF1 11972 106 + 1 UGGCUUAGAUGUUGACUUCUCGCAAGGACACCUAAAUAUUAGAAAAUAAAUAAUAAUAUCAGUGAAAUAAAAAUAAAACGUAAUAUCUAAGCACAUCCUUGUAAUA ..((((((((((((...((.(....)))(((....((((((............))))))..)))................))))))))))))(((....))).... ( -19.50) >consensus UGGCUUAGAUGUUGACUUCUCGCAAGACCACCUAAAUAUUGGAAAAUAAAUAAUAAUGUCAGUGAAAUAAAAAGAAAAUAUAAUAUCUAAGCAAAUCCUGGUA___ ..((((((((((((.....((....)).(((....((((((............))))))..)))................)))))))))))).............. (-14.78 = -14.74 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:50 2006