Locus 962

Sequence ID 2L_DroMel_CAF1
Location 2,771,078 – 2,771,191
Length 113
Max. P 0.749724
window1542

overview

Window 2

Location 2,771,078 – 2,771,191
Length 113
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 76.93
Mean single sequence MFE -40.70
Consensus MFE -25.44
Energy contribution -25.28
Covariance contribution -0.16
Combinations/Pair 1.33
Mean z-score -1.51
Structure conservation index 0.63
SVM decision value 0.47
SVM RNA-class probability 0.749724
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2771078 113 - 22407834
UCCGUUCCAUAUUGAAAAACCAUAAUGCGCCCAUUCUGGUGGUGGGCACCAACCUGGACAAGCUGAUGCGACGACCACUGCGUCGAAGGGGCAGCAUUGCCCACCAGUUAAAC
..................((((.((((....)))).))))((((((((((.....))....((((...(((((.......)))))......))))..))))))))........ ( -36.30)
>DroVir_CAF1 1427 113 - 1
UCCGACCCAUCUUAAAACGUCGCCACGUGCCCAUCCUAGUGGUGGGUACCAAACUGGAUAUGUUGAAAACGCGCCGGCUACGUCGCUCGGGCGGCAUUGCCGGCCAAUUGGGU
....(((((......(((((..(((.(((((((((.....))))))))).....)))..)))))......(.((((((...(((((....)))))...)))))))...))))) ( -46.70)
>DroSec_CAF1 831 113 - 1
UACGUUCCAUAUUGAAACGCCACCAUGUGCCCAUUCUGGUGGUUGGCACCAAGCUGGACAUGCUGAUGCGACGACCACUGCGUCGAAGCGGCAGCAUUGCCCACCAGCUGAAC
...((((.....((....(((((((.(........))))))))...))...((((((.(((((((.(((..((((......))))..))).))))).))....)))))))))) ( -37.40)
>DroSim_CAF1 825 110 - 1
UACGUUCCAUAUUGAAACGCCACCAUGUGCCCAUUCUGGUGGUGGGCACCAAGCUGGACAUGCUGAUGCGACGACCACUGCGUCGAAGCGG---CAUUGCCCACCAGCUGAAC
...((((...........((((..(((....)))..))))((((((((((.....))..((((((...(((((.......)))))...)))---)))))))))))....)))) ( -39.60)
>DroEre_CAF1 935 113 - 1
CACGAUCCAUUUUGAAACGCCACCAUGUCCCAAUUCUGGUGGUGGGCACCAAGCUGGAUAAGCUGGUCCGGCGACCAUUGCGUCGAAGCGGCAGAAUUGCCCACCAGCUGGAU
....(((((.((((...((((((((.(........))))))))).....)))).))))).(((((((.(((((.......)))))..(.(((......))))))))))).... ( -41.40)
>DroMoj_CAF1 722 113 - 1
UGCGUCCCAUAUUGAGGCGUCGCCACGUGCCCAUCCUAGUGGUGGGCACCAAAUUGGAUAUGUUGAAAUCGCGUCGUCUGCGCCGCUCGGGCGGCAUUGCCGACCAAUUGAGC
.((((.........(((((.(((...(((((((((.....))))))))).......(((........)))))).))))))))).((((.((((((...)))).))....)))) ( -42.80)
>consensus
UACGUUCCAUAUUGAAACGCCACCAUGUGCCCAUUCUGGUGGUGGGCACCAAGCUGGACAUGCUGAUGCGACGACCACUGCGUCGAAGCGGCAGCAUUGCCCACCAGCUGAAC
..........................(((((((((.....)))))))))..((((((...........(((((.......)))))..(.(((......)))).)))))).... (-25.44 = -25.28 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:42 2006