Locus 961

Sequence ID 2L_DroMel_CAF1
Location 2,770,669 – 2,770,776
Length 107
Max. P 0.874332
window1541

overview

Window 1

Location 2,770,669 – 2,770,776
Length 107
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 91.49
Mean single sequence MFE -34.05
Consensus MFE -29.71
Energy contribution -30.40
Covariance contribution 0.69
Combinations/Pair 1.04
Mean z-score -1.83
Structure conservation index 0.87
SVM decision value 0.89
SVM RNA-class probability 0.874332
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2770669 107 + 22407834
GUUUACCACUUGCAUUUGCACUUCCUCGGCGGCCGCCAGAUGCAGUGGCCACCAGGAUAAGAAGC--AGCCGAUGGUGCAGCUACCAGAUCCAAGAUCAUUUACACCAC
((((((((.((((.(((.....((((.((.((((((........)))))).))))))...)))))--))....))))).))).....((((...))))........... ( -30.60)
>DroSec_CAF1 387 105 + 1
GUUUACCACUUGCAUUUGCACUUCCUCGGCGGCCGCCAGAUGCAGUGGCCACCAGGAUAAGAAGC--AGCC--UGUUGCAGCUAGCAGAUCCAAGAUCACUUACAGCAC
........((((.((((((...((((.((.((((((........)))))).))))))..((..((--((..--..))))..)).)))))).)))).............. ( -35.00)
>DroSim_CAF1 381 105 + 1
GUUUACCACUUGCAUUUGCACUUCCUCGGCGGCCGCCAGAUGCAGUGGCCACCAGGAUAAGAAGC--ACCC--UGUUGCAGCUAGCAGAUCCAAGAUCAUUUACAGCAC
........((((.((((((...((((.((.((((((........)))))).))))))..((..((--(...--...)))..)).)))))).)))).............. ( -33.30)
>DroEre_CAF1 430 109 + 1
GUUUACCACUUGCAUUUGCACUUCCUCGGCGGCCGCCAGAUGCAGUGGCCACCAGGAUAAGAAGCCUAGCUAUAGCUGUAGCUGGCAGAUCCAAGAUCAUUUCUACCCC
..........(((....)))..((((.((.((((((........)))))).))))))..(((((((.((((((....))))))))).((((...))))..))))..... ( -37.30)
>consensus
GUUUACCACUUGCAUUUGCACUUCCUCGGCGGCCGCCAGAUGCAGUGGCCACCAGGAUAAGAAGC__AGCC__UGUUGCAGCUAGCAGAUCCAAGAUCAUUUACACCAC
........((((.((((((...((((.((.((((((........)))))).)))))).....(((..(((....)))...))).)))))).)))).............. (-29.71 = -30.40 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:41 2006