Locus 959

Sequence ID 2L_DroMel_CAF1
Location 2,767,319 – 2,767,411
Length 92
Max. P 0.757537
window1539

overview

Window 9

Location 2,767,319 – 2,767,411
Length 92
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 77.55
Mean single sequence MFE -26.23
Consensus MFE -17.11
Energy contribution -16.50
Covariance contribution -0.61
Combinations/Pair 1.22
Mean z-score -1.46
Structure conservation index 0.65
SVM decision value 0.49
SVM RNA-class probability 0.757537
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2767319 92 + 22407834
---------ACAAUGC-----AUGCCAUUAUCUACUGACUAUAGUCCACUUUCCUAACAUUAAUACCGUAGUCGGCCAAAGCCGGCUGCAGAUCCUCCAUGGUCAA
---------....(((-----(.(((..........(((((..((...................))..)))))(((....))))))))))((((......)))).. ( -22.51)
>DroPse_CAF1 2586 99 + 1
AGAAUUUAUA-------GAGUGUGCAGAGAUCUACUGGCUAUAGUCCAUUUUGCGAACAUUGAUUCCGUAGUCGGCCAGCGCUGGUUGCAGAUCUUCCAUGGUCAA
..........-------((.((((..(((((((..((((....).)))...................(((..((((....))))..)))))))))).)))).)).. ( -23.30)
>DroSim_CAF1 3249 106 + 1
AGGACUAACACAAUGCUUAGUAUGCCAUUAACUACUGGCUAUAGUCCACUUUCCUGACAUUAAUGCCGUAGUCGGCCAAAGCCGGCUGCAGGUCCUCCAUGGUCAG
.((((((.....((((...))))((((........))))..))))))......(((((......((((((((((((....))))))))).)))........))))) ( -37.44)
>DroEre_CAF1 3030 106 + 1
AGUACUAAGAAGAGGCUUAUUAUGCCCUUAACUACUGACUAUAGUCCAUUUUCCUAACAUUAAUGCCGUAGUCAGCCAAAGCCGGCUGCAAAUCCUCCAUGGUCAG
.........(((.(((.......)))))).....((((((((....((((...........))))..((((((.((....)).)))))).........)))))))) ( -24.30)
>DroYak_CAF1 3002 106 + 1
AGUACUAAUAUAAGGCUCAGUCUGCCAUUAACUACUGACUAUAGUCCAUUUUCCUAACAUUAAUGCCGUAGUCGGCCAAAGCCGGCUGUAGAUCCUCCAUGGUCAG
.............(((.......)))........((((((((....((((...........))))(..((((((((....))))))))..).......)))))))) ( -26.50)
>DroPer_CAF1 2642 99 + 1
AGAAUUUACA-------GAGUGUGCAGAGAUCUACUGGCUAUAGUCCAUUUUGCGAACAUUGAUUCCGUAGUCGGCCAGCGCUGGUUGCAGAUCUUCCAUGGUCAA
.((((...((-------(.((.(((((((....((((....))))...))))))).)).))))))).(((..((((....))))..))).((((......)))).. ( -23.30)
>consensus
AGAACUAACA_AA_GC_GAGUAUGCCAUUAACUACUGACUAUAGUCCAUUUUCCUAACAUUAAUGCCGUAGUCGGCCAAAGCCGGCUGCAGAUCCUCCAUGGUCAA
...................................(((((((.((...........)).........(((((((((....))))))))).........))))))). (-17.11 = -16.50 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:39 2006