Locus 957

Sequence ID 2L_DroMel_CAF1
Location 2,744,456 – 2,744,552
Length 96
Max. P 0.528640
window1537

overview

Window 7

Location 2,744,456 – 2,744,552
Length 96
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 78.48
Mean single sequence MFE -27.92
Consensus MFE -20.79
Energy contribution -19.38
Covariance contribution -1.41
Combinations/Pair 1.46
Mean z-score -0.93
Structure conservation index 0.74
SVM decision value -0.01
SVM RNA-class probability 0.528640
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2744456 96 - 22407834
--------------UAAUUUUUUGCCUAGGUUUUGGCAUCCCACUUGGGGCGUCCGGAUGGCAAAAAGAACAAAAAGUUUAGCCUGGAACCCGUGGCCAAGGAGCUGGAG
--------------...(((((((((.....((((((..(((....)))..).))))).))))))))).......(((((.((((((...))).)))....))))).... ( -27.90)
>DroSec_CAF1 162913 96 - 1
--------------UAAUUUUUUGUCUAGGUUUUGGCAUCCCACUUGGGACGUCCUGAUGGCAAGAAGAACAAAAAGUUUAGCCUGGAACCGGUGGCCAAGGAGCUGGAA
--------------..........(((((.(((((((.((((....))))(((((....(((.....((((.....)))).))).)))..))...)))))))..))))). ( -26.90)
>DroSim_CAF1 169049 96 - 1
--------------UAAUUUUUUGUCUAGGUCUUGGCAUCCCACUUGGGACGUCCUGAUGGCAAGAAGAACAAAAAGUUUAGCCUGGAACCGGUGGCCAAGGAGCUGGAA
--------------..........(((((.(((((((.((((....))))(((((....(((.....((((.....)))).))).)))..))...)))))))..))))). ( -29.40)
>DroEre_CAF1 181342 110 - 1
UUUUUAAAUCAUCAUAAGUCUUUGAUCAGGUUUUGGCUUCCCACUUGGGACGCCCCGAUGGCAAGAAGAACCAAAAGUUUAGUCUGGAACCGGUGUCCAAGGAGCUGGAG
...........((...((((((((..((((((((..(((.(((.(((((....)))))))).))).))))))...........(((....)))))..)))))).)).)). ( -28.50)
>DroWil_CAF1 311725 94 - 1
--------------CAAUCCUUU--UCAGGUUUUGGCUUCCCAUUUAGGGCGUCCGAAUGGUGAAAAGAAUCAAAAAUUCUCAUUAAAACCGGUGGCUAAGGAGUUGGAA
--------------((((((((.--.(.((((((((.(((((((((.((....)))))))).))).(((((.....)))))..))))))))....)..))))).)))... ( -22.90)
>DroYak_CAF1 172915 110 - 1
UUUAAAAAUCAUCAUAAUUCUUUGAUCAGGUUUUGGCUUCCCACUUGGGACGUCCUGAUGGCAAAAAGGACAAAAAGUUUAGCCUGGAACCGGUGGCCAAGGAGCUGGAG
...........((....(((((((..((((((((((((((((....)))).(((((..........))))).........)))).))))))..))..)))))))...)). ( -31.90)
>consensus
______________UAAUUCUUUGACCAGGUUUUGGCAUCCCACUUGGGACGUCCUGAUGGCAAAAAGAACAAAAAGUUUAGCCUGGAACCGGUGGCCAAGGAGCUGGAA
.........................((((.(((((((.((((....)))).)))....((((.....((((.....))))...(((....)))..)))))))).)))).. (-20.79 = -19.38 +  -1.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:37 2006